Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.88■□□□□ 0.61
CLRN1P58418 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.88■□□□□ 0.61
CLRN1P58418 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.88■□□□□ 0.61
CLRN1P58418 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.88■□□□□ 0.61
CLRN1P58418 IRS3P-201ENST00000223076 1006 ntBASIC18.87■□□□□ 0.61
CLRN1P58418 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN1P58418 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.87■□□□□ 0.61
CLRN1P58418 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN1P58418 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.87■□□□□ 0.61
CLRN1P58418 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.87■□□□□ 0.61
CLRN1P58418 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN1P58418 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CLRN1P58418 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.87■□□□□ 0.61
CLRN1P58418 AC005224.4-201ENST00000583262 1652 ntBASIC18.87■□□□□ 0.61
CLRN1P58418 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.87■□□□□ 0.61
CLRN1P58418 AL358852.1-201ENST00000623174 1268 ntBASIC18.87■□□□□ 0.61
CLRN1P58418 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLRN1P58418 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CLRN1P58418 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN1P58418 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN1P58418 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.86■□□□□ 0.61
CLRN1P58418 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN1P58418 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CLRN1P58418 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.86■□□□□ 0.61
CLRN1P58418 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
CLRN1P58418 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN1P58418 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN1P58418 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.86■□□□□ 0.61
CLRN1P58418 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLRN1P58418 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.86■□□□□ 0.61
CLRN1P58418 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLRN1P58418 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.85■□□□□ 0.61
CLRN1P58418 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CLRN1P58418 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.85■□□□□ 0.61
CLRN1P58418 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.85■□□□□ 0.61
CLRN1P58418 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.85■□□□□ 0.61
CLRN1P58418 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.85■□□□□ 0.61
CLRN1P58418 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.85■□□□□ 0.61
CLRN1P58418 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLRN1P58418 AC026310.3-201ENST00000625186 2373 ntBASIC18.85■□□□□ 0.61
CLRN1P58418 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.85■□□□□ 0.61
CLRN1P58418 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.85■□□□□ 0.61
CLRN1P58418 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.84■□□□□ 0.61
CLRN1P58418 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.84■□□□□ 0.61
CLRN1P58418 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.84■□□□□ 0.61
CLRN1P58418 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.84■□□□□ 0.61
CLRN1P58418 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.84■□□□□ 0.61
CLRN1P58418 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.84■□□□□ 0.61
CLRN1P58418 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.84■□□□□ 0.61
CLRN1P58418 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.84■□□□□ 0.61
CLRN1P58418 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CLRN1P58418 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.84■□□□□ 0.61
CLRN1P58418 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLRN1P58418 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CLRN1P58418 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.83■□□□□ 0.61
CLRN1P58418 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.83■□□□□ 0.61
CLRN1P58418 AC055733.4-201ENST00000638462 1354 ntBASIC18.83■□□□□ 0.61
CLRN1P58418 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLRN1P58418 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.83■□□□□ 0.61
CLRN1P58418 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLRN1P58418 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CLRN1P58418 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CLRN1P58418 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLRN1P58418 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
CLRN1P58418 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CLRN1P58418 MIR6084-201ENST00000622012 110 ntBASIC18.83■□□□□ 0.6
CLRN1P58418 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.83■□□□□ 0.6
CLRN1P58418 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.83■□□□□ 0.6
CLRN1P58418 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CLRN1P58418 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.83■□□□□ 0.6
CLRN1P58418 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.83■□□□□ 0.6
CLRN1P58418 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLRN1P58418 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CLRN1P58418 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms