Protein–RNA interactions for Protein: P49746

THBS3, Thrombospondin-3, humanhuman

Predictions only

Length 956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3P49746 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
THBS3P49746 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.42■□□□□ 0.38
THBS3P49746 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
THBS3P49746 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
THBS3P49746 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.42■□□□□ 0.38
THBS3P49746 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.42■□□□□ 0.38
THBS3P49746 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
THBS3P49746 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
THBS3P49746 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
THBS3P49746 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
THBS3P49746 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
THBS3P49746 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.41■□□□□ 0.38
THBS3P49746 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 MIR939-201ENST00000401314 82 ntBASIC17.41■□□□□ 0.38
THBS3P49746 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 AP001330.3-201ENST00000520123 633 ntBASIC17.41■□□□□ 0.38
THBS3P49746 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
THBS3P49746 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.41■□□□□ 0.38
THBS3P49746 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
THBS3P49746 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
THBS3P49746 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.4■□□□□ 0.38
THBS3P49746 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.4■□□□□ 0.38
THBS3P49746 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
THBS3P49746 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
THBS3P49746 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 Z98882.1-201ENST00000622160 2253 ntBASIC17.4■□□□□ 0.38
THBS3P49746 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
THBS3P49746 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
THBS3P49746 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.38
THBS3P49746 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
THBS3P49746 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.39■□□□□ 0.37
THBS3P49746 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
THBS3P49746 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.39■□□□□ 0.37
THBS3P49746 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.39■□□□□ 0.37
THBS3P49746 AC105265.2-201ENST00000467189 838 ntBASIC17.39■□□□□ 0.37
THBS3P49746 AC091305.1-201ENST00000479476 895 ntBASIC17.39■□□□□ 0.37
THBS3P49746 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.39■□□□□ 0.37
THBS3P49746 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.39■□□□□ 0.37
THBS3P49746 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
THBS3P49746 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
THBS3P49746 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
THBS3P49746 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.38■□□□□ 0.37
THBS3P49746 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.38■□□□□ 0.37
THBS3P49746 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
THBS3P49746 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.38■□□□□ 0.37
THBS3P49746 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.38■□□□□ 0.37
THBS3P49746 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
THBS3P49746 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.38■□□□□ 0.37
THBS3P49746 AP004607.7-201ENST00000527152 1677 ntBASIC17.38■□□□□ 0.37
THBS3P49746 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
THBS3P49746 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
THBS3P49746 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
THBS3P49746 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.37■□□□□ 0.37
THBS3P49746 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
THBS3P49746 AC026471.6-201ENST00000622954 1905 ntBASIC17.37■□□□□ 0.37
THBS3P49746 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.37■□□□□ 0.37
THBS3P49746 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
THBS3P49746 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
THBS3P49746 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms