Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL8A1P27658 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL8A1P27658 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.53■□□□□ 0.56
COL8A1P27658 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.53■□□□□ 0.56
COL8A1P27658 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL8A1P27658 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL8A1P27658 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL8A1P27658 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL8A1P27658 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL8A1P27658 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
COL8A1P27658 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL8A1P27658 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL8A1P27658 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.52■□□□□ 0.56
COL8A1P27658 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL8A1P27658 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.52■□□□□ 0.56
COL8A1P27658 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.52■□□□□ 0.56
COL8A1P27658 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL8A1P27658 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.52■□□□□ 0.56
COL8A1P27658 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.52■□□□□ 0.56
COL8A1P27658 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL8A1P27658 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL8A1P27658 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.52■□□□□ 0.55
COL8A1P27658 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.52■□□□□ 0.55
COL8A1P27658 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL8A1P27658 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.51■□□□□ 0.55
COL8A1P27658 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL8A1P27658 TSPY7P-201ENST00000431358 1114 ntBASIC18.51■□□□□ 0.55
COL8A1P27658 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.51■□□□□ 0.55
COL8A1P27658 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.51■□□□□ 0.55
COL8A1P27658 AC233263.1-201ENST00000578059 224 ntBASIC18.51■□□□□ 0.55
COL8A1P27658 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL8A1P27658 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL8A1P27658 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL8A1P27658 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL8A1P27658 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL8A1P27658 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.5■□□□□ 0.55
COL8A1P27658 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL8A1P27658 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
COL8A1P27658 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL8A1P27658 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.49■□□□□ 0.55
COL8A1P27658 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
COL8A1P27658 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.49■□□□□ 0.55
COL8A1P27658 RCN1P1-201ENST00000400413 996 ntBASIC18.49■□□□□ 0.55
COL8A1P27658 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.49■□□□□ 0.55
COL8A1P27658 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.49■□□□□ 0.55
COL8A1P27658 RN7SL471P-201ENST00000580476 299 ntBASIC18.49■□□□□ 0.55
COL8A1P27658 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL8A1P27658 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL8A1P27658 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL8A1P27658 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
COL8A1P27658 AP004607.7-201ENST00000527152 1677 ntBASIC18.48■□□□□ 0.55
COL8A1P27658 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.48■□□□□ 0.55
COL8A1P27658 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL8A1P27658 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.48■□□□□ 0.55
COL8A1P27658 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
COL8A1P27658 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.48■□□□□ 0.55
COL8A1P27658 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.48■□□□□ 0.55
COL8A1P27658 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.48■□□□□ 0.55
COL8A1P27658 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.48■□□□□ 0.55
COL8A1P27658 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL8A1P27658 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL8A1P27658 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL8A1P27658 KRT17P3-201ENST00000420566 1262 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms