Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
MSH3P20585 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.04■□□□□ 0.96
MSH3P20585 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.04■□□□□ 0.96
MSH3P20585 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH3P20585 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH3P20585 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
MSH3P20585 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
MSH3P20585 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
MSH3P20585 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH3P20585 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.03■□□□□ 0.96
MSH3P20585 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 AC104564.3-201ENST00000582367 638 ntBASIC21.03■□□□□ 0.96
MSH3P20585 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH3P20585 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH3P20585 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.02■□□□□ 0.96
MSH3P20585 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH3P20585 KRT87P-202ENST00000534226 1464 ntBASIC21.02■□□□□ 0.96
MSH3P20585 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH3P20585 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH3P20585 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MSH3P20585 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.02■□□□□ 0.96
MSH3P20585 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH3P20585 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH3P20585 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.02■□□□□ 0.95
MSH3P20585 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.02■□□□□ 0.95
MSH3P20585 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
MSH3P20585 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
MSH3P20585 FBXW4P1-201ENST00000426721 2239 ntBASIC21.01■□□□□ 0.95
MSH3P20585 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH3P20585 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH3P20585 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.01■□□□□ 0.95
MSH3P20585 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.01■□□□□ 0.95
MSH3P20585 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MSH3P20585 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.01■□□□□ 0.95
MSH3P20585 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MSH3P20585 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH3P20585 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH3P20585 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21■□□□□ 0.95
MSH3P20585 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21■□□□□ 0.95
MSH3P20585 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MSH3P20585 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH3P20585 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH3P20585 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH3P20585 GOLGA2P6-201ENST00000340929 2049 ntBASIC21■□□□□ 0.95
MSH3P20585 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH3P20585 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
MSH3P20585 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21■□□□□ 0.95
MSH3P20585 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH3P20585 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH3P20585 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH3P20585 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH3P20585 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MSH3P20585 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.99■□□□□ 0.95
MSH3P20585 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.99■□□□□ 0.95
MSH3P20585 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH3P20585 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH3P20585 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH3P20585 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH3P20585 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH3P20585 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH3P20585 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH3P20585 NTF6G-201ENST00000591094 616 ntBASIC20.98■□□□□ 0.95
MSH3P20585 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH3P20585 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
MSH3P20585 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH3P20585 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH3P20585 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
MSH3P20585 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH3P20585 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MSH3P20585 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms