Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.19■□□□□ 0.98
VIMP08670 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.19■□□□□ 0.98
VIMP08670 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.19■□□□□ 0.98
VIMP08670 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.19■□□□□ 0.98
VIMP08670 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.19■□□□□ 0.98
VIMP08670 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 AP005212.1-201ENST00000581547 1997 ntBASIC21.19■□□□□ 0.98
VIMP08670 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VIMP08670 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.18■□□□□ 0.98
VIMP08670 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.18■□□□□ 0.98
VIMP08670 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VIMP08670 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
VIMP08670 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.17■□□□□ 0.98
VIMP08670 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
VIMP08670 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.17■□□□□ 0.98
VIMP08670 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 AC073314.1-201ENST00000568729 2216 ntBASIC21.17■□□□□ 0.98
VIMP08670 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VIMP08670 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
VIMP08670 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.16■□□□□ 0.98
VIMP08670 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.16■□□□□ 0.98
VIMP08670 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
VIMP08670 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 AC005703.6-201ENST00000623265 1329 ntBASIC21.16■□□□□ 0.98
VIMP08670 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.16■□□□□ 0.98
VIMP08670 HSD17B1P1-201ENST00000590052 955 ntBASIC21.16■□□□□ 0.98
VIMP08670 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.16■□□□□ 0.98
VIMP08670 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VIMP08670 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.15■□□□□ 0.98
VIMP08670 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VIMP08670 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.15■□□□□ 0.98
VIMP08670 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.15■□□□□ 0.98
VIMP08670 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.15■□□□□ 0.98
VIMP08670 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VIMP08670 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
VIMP08670 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.14■□□□□ 0.98
VIMP08670 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VIMP08670 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.14■□□□□ 0.98
VIMP08670 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.98
VIMP08670 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VIMP08670 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.14■□□□□ 0.98
VIMP08670 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
VIMP08670 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
VIMP08670 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VIMP08670 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.14■□□□□ 0.97
VIMP08670 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.14■□□□□ 0.97
VIMP08670 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.14■□□□□ 0.97
VIMP08670 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VIMP08670 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
VIMP08670 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VIMP08670 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VIMP08670 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.14■□□□□ 0.97
VIMP08670 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
VIMP08670 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VIMP08670 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.14■□□□□ 0.97
VIMP08670 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms