Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CLDN9O95484 SUDS3P1-201ENST00000505831 966 ntBASIC20.45■□□□□ 0.86
CLDN9O95484 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.45■□□□□ 0.86
CLDN9O95484 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CLDN9O95484 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN9O95484 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN9O95484 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLDN9O95484 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN9O95484 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN9O95484 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.44■□□□□ 0.86
CLDN9O95484 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CLDN9O95484 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN9O95484 AC005224.4-201ENST00000583262 1652 ntBASIC20.44■□□□□ 0.86
CLDN9O95484 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CLDN9O95484 AC055733.4-201ENST00000638462 1354 ntBASIC20.44■□□□□ 0.86
CLDN9O95484 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN9O95484 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN9O95484 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CLDN9O95484 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN9O95484 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN9O95484 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.43■□□□□ 0.86
CLDN9O95484 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.43■□□□□ 0.86
CLDN9O95484 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLDN9O95484 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CLDN9O95484 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN9O95484 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN9O95484 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLDN9O95484 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLDN9O95484 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN9O95484 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CLDN9O95484 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN9O95484 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.42■□□□□ 0.86
CLDN9O95484 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN9O95484 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
CLDN9O95484 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CLDN9O95484 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
CLDN9O95484 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CLDN9O95484 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN9O95484 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CLDN9O95484 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN9O95484 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.41■□□□□ 0.86
CLDN9O95484 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN9O95484 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN9O95484 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN9O95484 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN9O95484 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
CLDN9O95484 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.4■□□□□ 0.86
CLDN9O95484 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.4■□□□□ 0.86
CLDN9O95484 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.4■□□□□ 0.86
CLDN9O95484 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.4■□□□□ 0.86
CLDN9O95484 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.4■□□□□ 0.86
CLDN9O95484 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.4■□□□□ 0.86
CLDN9O95484 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN9O95484 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CLDN9O95484 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.39■□□□□ 0.86
CLDN9O95484 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLDN9O95484 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CLDN9O95484 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN9O95484 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.39■□□□□ 0.85
CLDN9O95484 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.39■□□□□ 0.85
CLDN9O95484 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.39■□□□□ 0.85
CLDN9O95484 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms