Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
SEMA3DO95025 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.23■□□□□ 0.83
SEMA3DO95025 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.23■□□□□ 0.83
SEMA3DO95025 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.23■□□□□ 0.83
SEMA3DO95025 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SEMA3DO95025 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.22■□□□□ 0.83
SEMA3DO95025 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.22■□□□□ 0.83
SEMA3DO95025 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
SEMA3DO95025 IRS3P-201ENST00000223076 1006 ntBASIC20.22■□□□□ 0.83
SEMA3DO95025 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 TPRG1LP1-201ENST00000598702 760 ntBASIC20.22■□□□□ 0.83
SEMA3DO95025 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SEMA3DO95025 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SEMA3DO95025 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SEMA3DO95025 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEMA3DO95025 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.22■□□□□ 0.83
SEMA3DO95025 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.21■□□□□ 0.83
SEMA3DO95025 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.21■□□□□ 0.83
SEMA3DO95025 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.21■□□□□ 0.83
SEMA3DO95025 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.21■□□□□ 0.83
SEMA3DO95025 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.21■□□□□ 0.83
SEMA3DO95025 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.21■□□□□ 0.83
SEMA3DO95025 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.21■□□□□ 0.83
SEMA3DO95025 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.21■□□□□ 0.83
SEMA3DO95025 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.21■□□□□ 0.83
SEMA3DO95025 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.21■□□□□ 0.83
SEMA3DO95025 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SEMA3DO95025 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SEMA3DO95025 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.2■□□□□ 0.82
SEMA3DO95025 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.2■□□□□ 0.82
SEMA3DO95025 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SEMA3DO95025 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.2■□□□□ 0.82
SEMA3DO95025 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SEMA3DO95025 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SEMA3DO95025 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SEMA3DO95025 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SEMA3DO95025 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.2■□□□□ 0.82
SEMA3DO95025 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SEMA3DO95025 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.19■□□□□ 0.82
SEMA3DO95025 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SEMA3DO95025 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.19■□□□□ 0.82
SEMA3DO95025 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SEMA3DO95025 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.19■□□□□ 0.82
SEMA3DO95025 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.19■□□□□ 0.82
SEMA3DO95025 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.19■□□□□ 0.82
SEMA3DO95025 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.19■□□□□ 0.82
SEMA3DO95025 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.19■□□□□ 0.82
SEMA3DO95025 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SEMA3DO95025 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.18■□□□□ 0.82
SEMA3DO95025 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.18■□□□□ 0.82
SEMA3DO95025 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
SEMA3DO95025 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.18■□□□□ 0.82
SEMA3DO95025 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SEMA3DO95025 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.18■□□□□ 0.82
SEMA3DO95025 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
SEMA3DO95025 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SEMA3DO95025 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SEMA3DO95025 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms