Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC29.41■■■□□ 2.3
BRD4O60885 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
BRD4O60885 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC29.41■■■□□ 2.3
BRD4O60885 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC29.4■■■□□ 2.3
BRD4O60885 SLC29A4P1-201ENST00000398760 971 ntBASIC29.4■■■□□ 2.3
BRD4O60885 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC29.4■■■□□ 2.3
BRD4O60885 EEF1DP3-203ENST00000566025 782 ntBASIC29.4■■■□□ 2.3
BRD4O60885 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
BRD4O60885 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC29.4■■■□□ 2.3
BRD4O60885 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
BRD4O60885 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
BRD4O60885 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC29.39■■■□□ 2.3
BRD4O60885 RGMA-211ENST00000557420 989 ntTSL 3 BASIC29.39■■■□□ 2.3
BRD4O60885 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
BRD4O60885 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
BRD4O60885 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
BRD4O60885 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
BRD4O60885 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.29
BRD4O60885 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC29.39■■■□□ 2.29
BRD4O60885 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
BRD4O60885 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC29.39■■■□□ 2.29
BRD4O60885 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.29
BRD4O60885 AC069152.1-201ENST00000438030 544 ntBASIC29.39■■■□□ 2.29
BRD4O60885 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
BRD4O60885 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
BRD4O60885 C11orf96-202ENST00000528572 1834 ntBASIC29.39■■■□□ 2.29
BRD4O60885 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
BRD4O60885 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
BRD4O60885 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC29.38■■■□□ 2.29
BRD4O60885 LINC00565-201ENST00000562710 2331 ntBASIC29.38■■■□□ 2.29
BRD4O60885 UQCRFS1P1-201ENST00000435169 820 ntBASIC29.38■■■□□ 2.29
BRD4O60885 AC007322.4-201ENST00000509611 723 ntBASIC29.38■■■□□ 2.29
BRD4O60885 AL138781.1-201ENST00000566567 1274 ntBASIC29.38■■■□□ 2.29
BRD4O60885 AC013268.1-206ENST00000638368 961 ntBASIC29.38■■■□□ 2.29
BRD4O60885 AC112229.1-201ENST00000639295 961 ntBASIC29.38■■■□□ 2.29
BRD4O60885 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
BRD4O60885 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC29.38■■■□□ 2.29
BRD4O60885 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
BRD4O60885 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
BRD4O60885 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC29.37■■■□□ 2.29
BRD4O60885 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
BRD4O60885 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC29.37■■■□□ 2.29
BRD4O60885 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
BRD4O60885 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
BRD4O60885 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
BRD4O60885 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC29.37■■■□□ 2.29
BRD4O60885 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC29.37■■■□□ 2.29
BRD4O60885 AF201337.1-201ENST00000520239 748 ntBASIC29.37■■■□□ 2.29
BRD4O60885 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC29.37■■■□□ 2.29
BRD4O60885 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
BRD4O60885 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
BRD4O60885 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
BRD4O60885 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC29.36■■■□□ 2.29
BRD4O60885 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
BRD4O60885 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
BRD4O60885 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC29.36■■■□□ 2.29
BRD4O60885 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
BRD4O60885 PFKL-212ENST00000628044 129 ntTSL 3 BASIC29.36■■■□□ 2.29
BRD4O60885 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
BRD4O60885 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC29.35■■■□□ 2.29
BRD4O60885 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
BRD4O60885 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
BRD4O60885 AP004607.7-201ENST00000527152 1677 ntBASIC29.35■■■□□ 2.29
BRD4O60885 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
BRD4O60885 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC29.35■■■□□ 2.29
BRD4O60885 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
BRD4O60885 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
BRD4O60885 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC29.34■■■□□ 2.29
BRD4O60885 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
BRD4O60885 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
BRD4O60885 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
BRD4O60885 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
BRD4O60885 MYB-221ENST00000527615 2381 ntTSL 5 BASIC29.34■■■□□ 2.29
BRD4O60885 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
BRD4O60885 AC053503.5-201ENST00000601508 636 ntBASIC29.33■■■□□ 2.29
BRD4O60885 AC133041.1-202ENST00000642053 222 ntBASIC29.33■■■□□ 2.29
BRD4O60885 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
BRD4O60885 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC29.33■■■□□ 2.29
BRD4O60885 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC29.33■■■□□ 2.29
BRD4O60885 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC29.33■■■□□ 2.29
BRD4O60885 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC29.32■■■□□ 2.28
BRD4O60885 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
BRD4O60885 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
BRD4O60885 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC29.32■■■□□ 2.28
BRD4O60885 KLF13-207ENST00000560473 489 ntTSL 3 BASIC29.32■■■□□ 2.28
BRD4O60885 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC29.32■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms