Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM13O60858 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.79■□□□□ 0.92
TRIM13O60858 AP005435.1-201ENST00000529293 1178 ntBASIC20.79■□□□□ 0.92
TRIM13O60858 AL138724.1-201ENST00000606771 1088 ntBASIC20.79■□□□□ 0.92
TRIM13O60858 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
TRIM13O60858 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TRIM13O60858 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.78■□□□□ 0.92
TRIM13O60858 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TRIM13O60858 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TRIM13O60858 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM13O60858 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.78■□□□□ 0.92
TRIM13O60858 AL512631.2-201ENST00000604634 923 ntBASIC20.78■□□□□ 0.92
TRIM13O60858 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM13O60858 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM13O60858 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.77■□□□□ 0.92
TRIM13O60858 GUSBP5-201ENST00000418136 578 ntBASIC20.77■□□□□ 0.92
TRIM13O60858 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM13O60858 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM13O60858 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM13O60858 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.76■□□□□ 0.91
TRIM13O60858 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM13O60858 AL035685.1-201ENST00000636663 812 ntBASIC20.76■□□□□ 0.91
TRIM13O60858 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRIM13O60858 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM13O60858 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM13O60858 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM13O60858 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM13O60858 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 SERBP1P1-201ENST00000396021 1160 ntBASIC20.75■□□□□ 0.91
TRIM13O60858 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM13O60858 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.75■□□□□ 0.91
TRIM13O60858 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
TRIM13O60858 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 SYT6-210ENST00000641643 1587 ntBASIC20.75■□□□□ 0.91
TRIM13O60858 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM13O60858 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TRIM13O60858 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM13O60858 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM13O60858 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM13O60858 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 AP006587.3-201ENST00000525742 1516 ntBASIC20.74■□□□□ 0.91
TRIM13O60858 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TRIM13O60858 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM13O60858 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM13O60858 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TRIM13O60858 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 DUX4L19-201ENST00000557448 1267 ntBASIC20.74■□□□□ 0.91
TRIM13O60858 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.74■□□□□ 0.91
TRIM13O60858 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TRIM13O60858 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM13O60858 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM13O60858 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.74■□□□□ 0.91
TRIM13O60858 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
TRIM13O60858 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
TRIM13O60858 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms