Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CBX4O00257 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.62■■□□□ 1.05
CBX4O00257 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 HLA-L-209ENST00000420110 1011 ntBASIC21.62■■□□□ 1.05
CBX4O00257 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.62■■□□□ 1.05
CBX4O00257 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CBX4O00257 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CBX4O00257 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.61■■□□□ 1.05
CBX4O00257 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.61■■□□□ 1.05
CBX4O00257 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CBX4O00257 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CBX4O00257 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.61■■□□□ 1.05
CBX4O00257 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.61■■□□□ 1.05
CBX4O00257 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.61■■□□□ 1.05
CBX4O00257 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CBX4O00257 AC010141.2-201ENST00000452426 721 ntBASIC21.61■■□□□ 1.05
CBX4O00257 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CBX4O00257 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.61■■□□□ 1.05
CBX4O00257 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.61■■□□□ 1.05
CBX4O00257 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.61■■□□□ 1.05
CBX4O00257 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.61■■□□□ 1.05
CBX4O00257 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.61■■□□□ 1.05
CBX4O00257 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CBX4O00257 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CBX4O00257 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
CBX4O00257 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.6■■□□□ 1.05
CBX4O00257 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.6■■□□□ 1.05
CBX4O00257 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.6■■□□□ 1.05
CBX4O00257 AC006015.1-201ENST00000429970 570 ntBASIC21.6■■□□□ 1.05
CBX4O00257 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.6■■□□□ 1.05
CBX4O00257 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
CBX4O00257 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.6■■□□□ 1.05
CBX4O00257 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CBX4O00257 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
CBX4O00257 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.59■■□□□ 1.05
CBX4O00257 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.59■■□□□ 1.05
CBX4O00257 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.59■■□□□ 1.05
CBX4O00257 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
CBX4O00257 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CBX4O00257 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CBX4O00257 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
CBX4O00257 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CBX4O00257 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CBX4O00257 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CBX4O00257 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
CBX4O00257 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CBX4O00257 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CBX4O00257 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.58■■□□□ 1.05
CBX4O00257 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CBX4O00257 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.58■■□□□ 1.05
CBX4O00257 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CBX4O00257 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CBX4O00257 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CBX4O00257 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
CBX4O00257 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CBX4O00257 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CBX4O00257 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CBX4O00257 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.04
CBX4O00257 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CBX4O00257 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CBX4O00257 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CBX4O00257 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CBX4O00257 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.57■■□□□ 1.04
CBX4O00257 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CBX4O00257 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.57■■□□□ 1.04
CBX4O00257 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.57■■□□□ 1.04
CBX4O00257 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.57■■□□□ 1.04
CBX4O00257 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.57■■□□□ 1.04
CBX4O00257 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CBX4O00257 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CBX4O00257 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.57■■□□□ 1.04
CBX4O00257 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.57■■□□□ 1.04
CBX4O00257 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
CBX4O00257 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.56■■□□□ 1.04
CBX4O00257 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.56■■□□□ 1.04
CBX4O00257 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.56■■□□□ 1.04
CBX4O00257 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms