Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.72■□□□□ 0.91
TMX2-CTNND1H3BSU7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TMX2-CTNND1H3BSU7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 AL121603.2-201ENST00000557373 2117 ntBASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 MFSD11-216ENST00000590393 1141 ntBASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 AL121832.2-201ENST00000610979 668 ntBASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 ANOS2P-203ENST00000472227 1816 ntBASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
TMX2-CTNND1H3BSU7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.91
TMX2-CTNND1H3BSU7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TMX2-CTNND1H3BSU7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC007322.1-201ENST00000426983 750 ntBASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
TMX2-CTNND1H3BSU7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TMX2-CTNND1H3BSU7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TMX2-CTNND1H3BSU7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.67■□□□□ 0.9
TMX2-CTNND1H3BSU7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.66■□□□□ 0.9
TMX2-CTNND1H3BSU7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms