Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 AC092296.2-201ENST00000589470 999 ntBASIC20.02■□□□□ 0.8
LRRC42Q9Y546 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LRRC42Q9Y546 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 AL592295.1-201ENST00000400984 884 ntBASIC20.01■□□□□ 0.79
LRRC42Q9Y546 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LRRC42Q9Y546 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20■□□□□ 0.79
LRRC42Q9Y546 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20■□□□□ 0.79
LRRC42Q9Y546 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20■□□□□ 0.79
LRRC42Q9Y546 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 AC027702.1-201ENST00000563810 1770 ntBASIC20■□□□□ 0.79
LRRC42Q9Y546 AL162377.1-201ENST00000618844 1793 ntBASIC20■□□□□ 0.79
LRRC42Q9Y546 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20■□□□□ 0.79
LRRC42Q9Y546 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20■□□□□ 0.79
LRRC42Q9Y546 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LRRC42Q9Y546 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 ECEL1P2-201ENST00000461596 1295 ntBASIC19.99■□□□□ 0.79
LRRC42Q9Y546 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LRRC42Q9Y546 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 AC026202.3-201ENST00000600805 1127 ntBASIC19.98■□□□□ 0.79
LRRC42Q9Y546 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LRRC42Q9Y546 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 RAP2CP1-202ENST00000605179 643 ntBASIC19.97■□□□□ 0.79
LRRC42Q9Y546 MIR7108-201ENST00000614319 87 ntBASIC19.97■□□□□ 0.79
LRRC42Q9Y546 AC020907.5-201ENST00000624372 1936 ntBASIC19.97■□□□□ 0.79
LRRC42Q9Y546 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.97■□□□□ 0.79
LRRC42Q9Y546 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms