Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 IGHV3-19-201ENST00000521488 291 ntBASIC17.12■□□□□ 0.33
FOXA2Q9Y261 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA2Q9Y261 AF106564.1-201ENST00000607058 2553 ntBASIC17.11■□□□□ 0.33
FOXA2Q9Y261 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
FOXA2Q9Y261 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 TSPY26P-201ENST00000476365 1326 ntBASIC17.09■□□□□ 0.33
FOXA2Q9Y261 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
FOXA2Q9Y261 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.08■□□□□ 0.33
FOXA2Q9Y261 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA2Q9Y261 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 AC105265.2-201ENST00000467189 838 ntBASIC17.07■□□□□ 0.32
FOXA2Q9Y261 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
FOXA2Q9Y261 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms