Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.07■■□□□ 1.28
CDT1Q9H211 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDT1Q9H211 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.07■■□□□ 1.28
CDT1Q9H211 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CDT1Q9H211 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
CDT1Q9H211 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
CDT1Q9H211 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.06■■□□□ 1.28
CDT1Q9H211 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.06■■□□□ 1.28
CDT1Q9H211 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.06■■□□□ 1.28
CDT1Q9H211 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.06■■□□□ 1.28
CDT1Q9H211 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 AC011767.1-201ENST00000617410 1153 ntBASIC23.06■■□□□ 1.28
CDT1Q9H211 AC073111.5-205ENST00000641717 521 ntBASIC23.06■■□□□ 1.28
CDT1Q9H211 MYCNOS-205ENST00000641950 531 ntBASIC23.06■■□□□ 1.28
CDT1Q9H211 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.06■■□□□ 1.28
CDT1Q9H211 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDT1Q9H211 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CDT1Q9H211 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.05■■□□□ 1.28
CDT1Q9H211 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDT1Q9H211 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.05■■□□□ 1.28
CDT1Q9H211 KRT18P20-201ENST00000548986 1279 ntBASIC23.05■■□□□ 1.28
CDT1Q9H211 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.05■■□□□ 1.28
CDT1Q9H211 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
CDT1Q9H211 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDT1Q9H211 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDT1Q9H211 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDT1Q9H211 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.04■■□□□ 1.28
CDT1Q9H211 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDT1Q9H211 CDCA4P2-201ENST00000441182 718 ntBASIC23.04■■□□□ 1.28
CDT1Q9H211 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.04■■□□□ 1.28
CDT1Q9H211 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
CDT1Q9H211 SLC7A5P2-201ENST00000553010 536 ntBASIC23.04■■□□□ 1.28
CDT1Q9H211 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDT1Q9H211 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.04■■□□□ 1.28
CDT1Q9H211 RAP2CP1-201ENST00000605103 478 ntBASIC23.04■■□□□ 1.28
CDT1Q9H211 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDT1Q9H211 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.04■■□□□ 1.28
CDT1Q9H211 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CDT1Q9H211 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.03■■□□□ 1.28
CDT1Q9H211 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC23.03■■□□□ 1.28
CDT1Q9H211 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC23.03■■□□□ 1.28
CDT1Q9H211 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.03■■□□□ 1.28
CDT1Q9H211 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.03■■□□□ 1.28
CDT1Q9H211 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.03■■□□□ 1.28
CDT1Q9H211 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDT1Q9H211 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CDT1Q9H211 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC23.02■■□□□ 1.28
CDT1Q9H211 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.02■■□□□ 1.28
CDT1Q9H211 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.02■■□□□ 1.28
CDT1Q9H211 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.02■■□□□ 1.28
CDT1Q9H211 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CDT1Q9H211 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.02■■□□□ 1.28
CDT1Q9H211 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.02■■□□□ 1.28
CDT1Q9H211 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CDT1Q9H211 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDT1Q9H211 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
CDT1Q9H211 C11orf96-202ENST00000528572 1834 ntBASIC23.01■■□□□ 1.27
CDT1Q9H211 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CDT1Q9H211 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.01■■□□□ 1.27
CDT1Q9H211 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.01■■□□□ 1.27
CDT1Q9H211 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDT1Q9H211 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
CDT1Q9H211 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.01■■□□□ 1.27
CDT1Q9H211 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.01■■□□□ 1.27
CDT1Q9H211 AC008175.2-201ENST00000612840 297 ntBASIC23.01■■□□□ 1.27
CDT1Q9H211 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
CDT1Q9H211 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CDT1Q9H211 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDT1Q9H211 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CDT1Q9H211 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
CDT1Q9H211 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
CDT1Q9H211 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms