Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.032e-8■■■■■ 27
XRN2Q9H0D6 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.8□□□□□ -0.044e-6■■■■■ 27
XRN2Q9H0D6 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC14.79□□□□□ -0.048e-8■■■■■ 27
XRN2Q9H0D6 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.66□□□□□ -0.061e-8■■■■■ 27
XRN2Q9H0D6 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.121e-8■■■■■ 27
XRN2Q9H0D6 PYGB-202ENST00000428458 734 ntTSL 314.05□□□□□ -0.161e-8■■■■■ 27
XRN2Q9H0D6 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.191e-8■■■■■ 27
XRN2Q9H0D6 IL4R-218ENST00000568746 2900 ntTSL 213.02□□□□□ -0.333e-7■■■■■ 27
XRN2Q9H0D6 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.331e-8■■■■■ 27
XRN2Q9H0D6 AGPAT3-209ENST00000448845 392 ntTSL 512.22□□□□□ -0.451e-6■■■■■ 27
XRN2Q9H0D6 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.461e-8■■■■■ 27
XRN2Q9H0D6 UBASH3B-201ENST00000284273 6912 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.521e-8■■■■■ 27
XRN2Q9H0D6 NUP50-215ENST00000484186 431 ntTSL 511.36□□□□□ -0.591e-8■■■■■ 27
XRN2Q9H0D6 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.594e-6■■■■■ 27
XRN2Q9H0D6 RPS10-NUDT3-203ENST00000639877 2911 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.621e-8■■■■■ 27
XRN2Q9H0D6 IL4R-202ENST00000395762 3685 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.683e-7■■■■■ 27
XRN2Q9H0D6 IL4R-203ENST00000543915 3539 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.743e-7■■■■■ 27
XRN2Q9H0D6 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.781e-8■■■■■ 27
XRN2Q9H0D6 CREBRF-205ENST00000522692 2466 ntTSL 1 (best) BASIC10.09□□□□□ -0.798e-8■■■■■ 27
XRN2Q9H0D6 CREBRF-204ENST00000520464 5163 ntTSL 28.87□□□□□ -0.998e-8■■■■■ 27
XRN2Q9H0D6 CLNS1A-206ENST00000526761 415 ntTSL 38.69□□□□□ -1.021e-8■■■■■ 27
XRN2Q9H0D6 RPS10-NUDT3-201ENST00000605528 595 ntTSL 58.44□□□□□ -1.061e-8■■■■■ 27
XRN2Q9H0D6 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.97□□□□□ -1.291e-8■■■■■ 27
XRN2Q9H0D6 KSR1-208ENST00000579309 343 ntTSL 56.87□□□□□ -1.311e-8■■■■■ 27
XRN2Q9H0D6 RNF220-207ENST00000470498 594 ntTSL 35.78□□□□□ -1.481e-8■■■■■ 27
XRN2Q9H0D6 C16orf72-202ENST00000574285 10359 ntTSL 25.23□□□□□ -1.573e-8■■■■■ 27
XRN2Q9H0D6 RNU6-98P-201ENST00000384173 107 ntBASIC4.97□□□□□ -1.611e-8■■■■■ 27
XRN2Q9H0D6 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.938e-8■■■■■ 27
XRN2Q9H0D6 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.261e-8■■■■■ 27
XRN2Q9H0D6 ZCCHC11-217ENST00000524582 539 ntTSL 423.82■■□□□ 1.43e-7■■■■■ 27
XRN2Q9H0D6 MIR574-201ENST00000385209 96 ntBASIC21.19■□□□□ 0.983e-7■■■■■ 27
XRN2Q9H0D6 SLC25A10-204ENST00000570310 595 ntTSL 318.43■□□□□ 0.543e-7■■■■■ 27
XRN2Q9H0D6 SLC25A10-208ENST00000574884 726 ntTSL 517.28■□□□□ 0.363e-7■■■■■ 27
XRN2Q9H0D6 SLC25A10-206ENST00000573246 898 ntTSL 316.24■□□□□ 0.193e-7■■■■■ 27
XRN2Q9H0D6 ZCCHC11-214ENST00000484723 2910 ntTSL 1 (best)15.66■□□□□ 0.13e-7■■■■■ 27
XRN2Q9H0D6 SUN1-209ENST00000424128 633 ntTSL 521.44■■□□□ 1.025e-16■■■■■ 27
XRN2Q9H0D6 VEGFA-217ENST00000518538 535 ntTSL 225.55■■□□□ 1.681e-8■■■■■ 27
XRN2Q9H0D6 DAZAP1-206ENST00000587833 560 ntTSL 511.9□□□□□ -0.51e-6■■■■■ 27
XRN2Q9H0D6 CCDC57-218ENST00000583593 429 ntTSL 316.57■□□□□ 0.244e-6■■■■■ 27
XRN2Q9H0D6 CCDC57-204ENST00000392345 678 ntAPPRIS ALT2 TSL 316.53■□□□□ 0.244e-6■■■■■ 27
XRN2Q9H0D6 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.414e-6■■■■■ 27
XRN2Q9H0D6 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.414e-6■■■■■ 27
XRN2Q9H0D6 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.239e-6■■■■■ 26.9
XRN2Q9H0D6 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.71□□□□□ -0.052e-7■■■■■ 26.9
XRN2Q9H0D6 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.092e-7■■■■■ 26.9
XRN2Q9H0D6 AL121845.2-202ENST00000476221 446 ntTSL 521.16■□□□□ 0.986e-7■■■■■ 26.9
XRN2Q9H0D6 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.526e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-207ENST00000521458 541 ntTSL 222.07■■□□□ 1.124e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-203ENST00000518067 849 ntTSL 521.66■■□□□ 1.064e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-204ENST00000518997 679 ntTSL 321.43■■□□□ 1.024e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-208ENST00000522493 530 ntTSL 421.43■■□□□ 1.024e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-209ENST00000523140 840 ntTSL 319.93■□□□□ 0.784e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-205ENST00000519665 2128 ntTSL 518.71■□□□□ 0.594e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-211ENST00000524217 400 ntTSL 217.84■□□□□ 0.454e-7■■■■■ 26.9
XRN2Q9H0D6 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.224e-7■■■■■ 26.9
XRN2Q9H0D6 SH3BP4-209ENST00000484097 612 ntTSL 222.62■■□□□ 1.212e-6■■■■■ 26.9
XRN2Q9H0D6 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.542e-8■■■■■ 26.9
XRN2Q9H0D6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.62■□□□□ 0.893e-6■■■■■ 26.8
XRN2Q9H0D6 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC9.14□□□□□ -0.953e-6■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-201ENST00000352800 611 ntTSL 524.41■■□□□ 1.56e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-204ENST00000422442 564 ntTSL 523.59■■□□□ 1.376e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-203ENST00000422066 604 ntTSL 421.74■■□□□ 1.076e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-209ENST00000431421 550 ntTSL 421.74■■□□□ 1.076e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-219ENST00000627825 312 ntTSL 521.7■■□□□ 1.066e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-217ENST00000626672 568 ntTSL 420.93■□□□□ 0.946e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-202ENST00000413084 592 ntTSL 420.93■□□□□ 0.946e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-225ENST00000636187 171 ntTSL 520.27■□□□□ 0.846e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-206ENST00000427349 554 ntTSL 319.42■□□□□ 0.76e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-210ENST00000431674 559 ntTSL 418.21■□□□□ 0.516e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-213ENST00000450267 588 ntTSL 317.54■□□□□ 0.46e-9■■■■■ 26.8
XRN2Q9H0D6 TBL1XR1-221ENST00000630833 567 ntTSL 46.51□□□□□ -1.376e-9■■■■■ 26.8
XRN2Q9H0D6 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.662e-6■■■■■ 26.8
XRN2Q9H0D6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.17■□□□□ 0.662e-6■■■■■ 26.8
XRN2Q9H0D6 HDAC4-210ENST00000493582 3188 ntTSL 1 (best)10.82□□□□□ -0.682e-6■■■■■ 26.8
XRN2Q9H0D6 PRMT1-204ENST00000525616 780 ntTSL 227.11■■□□□ 1.939e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-220ENST00000534676 915 ntTSL 223.01■■□□□ 1.279e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-218ENST00000534280 766 ntTSL 322.69■■□□□ 1.229e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-203ENST00000524771 713 ntTSL 319.28■□□□□ 0.689e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-214ENST00000529836 580 ntTSL 319.09■□□□□ 0.659e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-211ENST00000528623 543 ntTSL 315.02■□□□□ -09e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-207ENST00000527382 699 ntTSL 314.94□□□□□ -0.029e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-219ENST00000534465 779 ntTSL 314.94□□□□□ -0.029e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-212ENST00000529284 1182 ntTSL 513.41□□□□□ -0.269e-8■■■■■ 26.8
XRN2Q9H0D6 PRMT1-205ENST00000525915 298 ntTSL 36.11□□□□□ -1.439e-8■■■■■ 26.8
XRN2Q9H0D6 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.652e-7■■■■■ 26.8
XRN2Q9H0D6 NFKBIA-203ENST00000554001 1396 ntTSL 517.92■□□□□ 0.462e-7■■■■■ 26.8
XRN2Q9H0D6 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC14.53□□□□□ -0.082e-7■■■■■ 26.8
XRN2Q9H0D6 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.62e-6■■■■■ 26.8
XRN2Q9H0D6 LINC-PINT-202ENST00000423414 616 ntTSL 426.94■■□□□ 1.92e-6■■■■□ 26.7
XRN2Q9H0D6 LINC-PINT-204ENST00000431189 803 ntTSL 326.32■■□□□ 1.82e-6■■■■□ 26.7
XRN2Q9H0D6 LINC-PINT-208ENST00000451786 3505 ntTSL 2 BASIC12.69□□□□□ -0.382e-6■■■■□ 26.7
XRN2Q9H0D6 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.24■■■□□ 2.592e-6■■■■□ 26.7
XRN2Q9H0D6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.89■□□□□ 0.931e-6■■■■□ 26.7
XRN2Q9H0D6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.36■□□□□ 0.211e-6■■■■□ 26.7
XRN2Q9H0D6 BDH1-214ENST00000479425 1144 ntTSL 216.06■□□□□ 0.167e-7■■■■□ 26.7
XRN2Q9H0D6 BDH1-206ENST00000434143 659 ntTSL 314.58□□□□□ -0.087e-7■■■■□ 26.7
XRN2Q9H0D6 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC14.11□□□□□ -0.155e-12■■■■□ 26.7
XRN2Q9H0D6 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.271e-6■■■■□ 26.7
XRN2Q9H0D6 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC13.11□□□□□ -0.311e-6■■■■□ 26.7
XRN2Q9H0D6 CCT6P3-202ENST00000426828 2238 ntTSL 1 (best) BASIC12.92□□□□□ -0.345e-12■■■■□ 26.7
Retrieved 100 of 21,068 protein–RNA pairs in 489.2 ms