Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC28.7■■■□□ 2.19
ABCA3Q99758 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
ABCA3Q99758 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC28.7■■■□□ 2.18
ABCA3Q99758 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
ABCA3Q99758 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
ABCA3Q99758 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC28.7■■■□□ 2.18
ABCA3Q99758 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC28.7■■■□□ 2.18
ABCA3Q99758 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
ABCA3Q99758 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
ABCA3Q99758 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
ABCA3Q99758 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC28.69■■■□□ 2.18
ABCA3Q99758 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
ABCA3Q99758 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC28.69■■■□□ 2.18
ABCA3Q99758 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC28.69■■■□□ 2.18
ABCA3Q99758 AC069544.1-201ENST00000609399 999 ntBASIC28.69■■■□□ 2.18
ABCA3Q99758 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
ABCA3Q99758 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ABCA3Q99758 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
ABCA3Q99758 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
ABCA3Q99758 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC28.69■■■□□ 2.18
ABCA3Q99758 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ABCA3Q99758 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
ABCA3Q99758 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
ABCA3Q99758 AC233263.1-201ENST00000578059 224 ntBASIC28.69■■■□□ 2.18
ABCA3Q99758 AC008175.2-201ENST00000612840 297 ntBASIC28.69■■■□□ 2.18
ABCA3Q99758 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
ABCA3Q99758 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
ABCA3Q99758 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC28.68■■■□□ 2.18
ABCA3Q99758 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
ABCA3Q99758 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC28.68■■■□□ 2.18
ABCA3Q99758 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC28.68■■■□□ 2.18
ABCA3Q99758 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
ABCA3Q99758 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC28.68■■■□□ 2.18
ABCA3Q99758 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC28.68■■■□□ 2.18
ABCA3Q99758 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC28.68■■■□□ 2.18
ABCA3Q99758 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC28.68■■■□□ 2.18
ABCA3Q99758 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
ABCA3Q99758 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ABCA3Q99758 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ABCA3Q99758 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ABCA3Q99758 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ABCA3Q99758 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC28.67■■■□□ 2.18
ABCA3Q99758 FAM197Y4-202ENST00000622692 608 ntBASIC28.67■■■□□ 2.18
ABCA3Q99758 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ABCA3Q99758 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
ABCA3Q99758 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
ABCA3Q99758 ECEL1P3-201ENST00000427961 737 ntBASIC28.66■■■□□ 2.18
ABCA3Q99758 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC28.66■■■□□ 2.18
ABCA3Q99758 RNF146-206ENST00000480444 843 ntTSL 2 BASIC28.66■■■□□ 2.18
ABCA3Q99758 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC28.66■■■□□ 2.18
ABCA3Q99758 KLF2-202ENST00000592003 564 ntTSL 3 BASIC28.66■■■□□ 2.18
ABCA3Q99758 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
ABCA3Q99758 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
ABCA3Q99758 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC28.66■■■□□ 2.18
ABCA3Q99758 MDFI-202ENST00000373050 809 ntTSL 2 BASIC28.66■■■□□ 2.18
ABCA3Q99758 AL355472.2-201ENST00000422958 438 ntBASIC28.66■■■□□ 2.18
ABCA3Q99758 AC120498.10-201ENST00000621827 505 ntBASIC28.66■■■□□ 2.18
ABCA3Q99758 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
ABCA3Q99758 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
ABCA3Q99758 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ABCA3Q99758 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
ABCA3Q99758 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC28.65■■■□□ 2.18
ABCA3Q99758 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC28.65■■■□□ 2.18
ABCA3Q99758 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
ABCA3Q99758 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC28.65■■■□□ 2.18
ABCA3Q99758 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
ABCA3Q99758 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC28.64■■■□□ 2.18
ABCA3Q99758 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC28.64■■■□□ 2.18
ABCA3Q99758 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
ABCA3Q99758 POU5F1P4-201ENST00000413175 1085 ntBASIC28.64■■■□□ 2.18
ABCA3Q99758 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
ABCA3Q99758 PNMA6B-201ENST00000538162 1200 ntBASIC28.64■■■□□ 2.18
ABCA3Q99758 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
ABCA3Q99758 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
ABCA3Q99758 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
ABCA3Q99758 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 AL591742.1-201ENST00000604433 565 ntBASIC28.63■■■□□ 2.17
ABCA3Q99758 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC28.63■■■□□ 2.17
ABCA3Q99758 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC28.63■■■□□ 2.17
ABCA3Q99758 GXYLT1P3-201ENST00000453058 1193 ntBASIC28.63■■■□□ 2.17
ABCA3Q99758 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ABCA3Q99758 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
ABCA3Q99758 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC28.62■■■□□ 2.17
ABCA3Q99758 RPS20-210ENST00000523936 899 ntTSL 2 BASIC28.62■■■□□ 2.17
ABCA3Q99758 C1QBPP2-201ENST00000528754 825 ntBASIC28.62■■■□□ 2.17
ABCA3Q99758 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC28.62■■■□□ 2.17
ABCA3Q99758 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
ABCA3Q99758 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.61■■■□□ 2.17
ABCA3Q99758 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
ABCA3Q99758 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
ABCA3Q99758 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC28.61■■■□□ 2.17
ABCA3Q99758 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC28.61■■■□□ 2.17
ABCA3Q99758 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC28.61■■■□□ 2.17
ABCA3Q99758 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
ABCA3Q99758 AC020928.2-201ENST00000588717 2197 ntBASIC28.61■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms