Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPENQ96T58 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.29■□□□□ 0.68
SPENQ96T58 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.29■□□□□ 0.68
SPENQ96T58 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.29■□□□□ 0.68
SPENQ96T58 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SPENQ96T58 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SPENQ96T58 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
SPENQ96T58 AC093323.1-202ENST00000635031 2045 ntBASIC19.29■□□□□ 0.68
SPENQ96T58 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SPENQ96T58 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPENQ96T58 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.29■□□□□ 0.68
SPENQ96T58 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPENQ96T58 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.29■□□□□ 0.68
SPENQ96T58 AL158047.1-201ENST00000445918 881 ntBASIC19.29■□□□□ 0.68
SPENQ96T58 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPENQ96T58 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.29■□□□□ 0.68
SPENQ96T58 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.28■□□□□ 0.68
SPENQ96T58 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.28■□□□□ 0.68
SPENQ96T58 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.28■□□□□ 0.68
SPENQ96T58 AC008403.3-201ENST00000598924 454 ntBASIC19.28■□□□□ 0.68
SPENQ96T58 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SPENQ96T58 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.28■□□□□ 0.68
SPENQ96T58 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.28■□□□□ 0.68
SPENQ96T58 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.28■□□□□ 0.68
SPENQ96T58 KRT18P20-201ENST00000548986 1279 ntBASIC19.28■□□□□ 0.68
SPENQ96T58 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPENQ96T58 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPENQ96T58 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.27■□□□□ 0.68
SPENQ96T58 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPENQ96T58 ESRRAP1-201ENST00000400596 1257 ntBASIC19.27■□□□□ 0.68
SPENQ96T58 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SPENQ96T58 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SPENQ96T58 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPENQ96T58 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPENQ96T58 AC211429.1-201ENST00000415277 523 ntBASIC19.27■□□□□ 0.68
SPENQ96T58 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.27■□□□□ 0.68
SPENQ96T58 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.27■□□□□ 0.68
SPENQ96T58 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.27■□□□□ 0.68
SPENQ96T58 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SPENQ96T58 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
SPENQ96T58 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SPENQ96T58 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.27■□□□□ 0.67
SPENQ96T58 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.27■□□□□ 0.67
SPENQ96T58 BX276092.2-201ENST00000417668 665 ntBASIC19.27■□□□□ 0.67
SPENQ96T58 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.27■□□□□ 0.67
SPENQ96T58 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SPENQ96T58 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SPENQ96T58 AC026471.6-201ENST00000622954 1905 ntBASIC19.26■□□□□ 0.67
SPENQ96T58 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SPENQ96T58 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.26■□□□□ 0.67
SPENQ96T58 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.26■□□□□ 0.67
SPENQ96T58 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.26■□□□□ 0.67
SPENQ96T58 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.26■□□□□ 0.67
SPENQ96T58 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPENQ96T58 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.26■□□□□ 0.67
SPENQ96T58 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SPENQ96T58 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPENQ96T58 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SPENQ96T58 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.25■□□□□ 0.67
SPENQ96T58 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPENQ96T58 AC008694.1-202ENST00000636953 945 ntBASIC19.25■□□□□ 0.67
SPENQ96T58 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.25■□□□□ 0.67
SPENQ96T58 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPENQ96T58 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPENQ96T58 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 AL512625.2-201ENST00000417533 625 ntBASIC19.24■□□□□ 0.67
SPENQ96T58 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 AC087742.1-201ENST00000575880 1738 ntBASIC19.24■□□□□ 0.67
SPENQ96T58 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SPENQ96T58 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.24■□□□□ 0.67
SPENQ96T58 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.24■□□□□ 0.67
SPENQ96T58 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.24■□□□□ 0.67
SPENQ96T58 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.24■□□□□ 0.67
SPENQ96T58 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPENQ96T58 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPENQ96T58 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SPENQ96T58 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms