Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 SLC47A1P1-202ENST00000449666 945 ntBASIC15.84■□□□□ 0.13
LINC00477Q96M19 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 TRIR-202ENST00000588213 841 ntTSL 3 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LINC00477Q96M19 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC15.84■□□□□ 0.13
LINC00477Q96M19 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
LINC00477Q96M19 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.83■□□□□ 0.13
LINC00477Q96M19 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.83■□□□□ 0.13
LINC00477Q96M19 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LINC00477Q96M19 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.13
LINC00477Q96M19 AC003102.1-202ENST00000563394 1796 ntBASIC15.83■□□□□ 0.12
LINC00477Q96M19 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LINC00477Q96M19 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LINC00477Q96M19 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LINC00477Q96M19 DYM-203ENST00000442713 2147 ntTSL 2 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LINC00477Q96M19 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
LINC00477Q96M19 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 SNX3-202ENST00000349379 890 ntTSL 2 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 AL024507.2-201ENST00000606070 2574 ntBASIC15.82■□□□□ 0.12
LINC00477Q96M19 AF106564.1-201ENST00000607058 2553 ntBASIC15.82■□□□□ 0.12
LINC00477Q96M19 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC15.82■□□□□ 0.12
LINC00477Q96M19 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LINC00477Q96M19 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
LINC00477Q96M19 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LINC00477Q96M19 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LINC00477Q96M19 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LINC00477Q96M19 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
LINC00477Q96M19 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
LINC00477Q96M19 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LINC00477Q96M19 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LINC00477Q96M19 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LINC00477Q96M19 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LINC00477Q96M19 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms