Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 AC110285.7-201ENST00000624417 1536 ntBASIC13.33□□□□□ -0.28
LINC00643Q86TS7 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 AC087742.1-201ENST00000575880 1738 ntBASIC13.33□□□□□ -0.28
LINC00643Q86TS7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 AP005212.1-201ENST00000581547 1997 ntBASIC13.32□□□□□ -0.28
LINC00643Q86TS7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 NOC2LP1-202ENST00000452600 2235 ntBASIC13.32□□□□□ -0.28
LINC00643Q86TS7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00643Q86TS7 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00643Q86TS7 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 AC020763.4-201ENST00000623414 4170 ntBASIC13.3□□□□□ -0.28
LINC00643Q86TS7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00643Q86TS7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00643Q86TS7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00643Q86TS7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms