Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA3P55318 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXA3P55318 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA3P55318 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXA3P55318 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC15.88■□□□□ 0.13
FOXA3P55318 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
FOXA3P55318 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXA3P55318 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA3P55318 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
FOXA3P55318 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
FOXA3P55318 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA3P55318 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
FOXA3P55318 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA3P55318 AC004687.1-201ENST00000579003 1625 ntBASIC15.86■□□□□ 0.13
FOXA3P55318 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
FOXA3P55318 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC15.86■□□□□ 0.13
FOXA3P55318 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA3P55318 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA3P55318 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
FOXA3P55318 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA3P55318 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
FOXA3P55318 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC15.86■□□□□ 0.13
FOXA3P55318 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
FOXA3P55318 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA3P55318 AC129492.7-201ENST00000622992 756 ntBASIC15.86■□□□□ 0.13
FOXA3P55318 GABARAPL3-202ENST00000624044 1851 ntBASIC15.86■□□□□ 0.13
FOXA3P55318 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA3P55318 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
FOXA3P55318 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA3P55318 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA3P55318 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 SNX5-217ENST00000606557 1087 ntBASIC15.85■□□□□ 0.13
FOXA3P55318 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA3P55318 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
FOXA3P55318 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
FOXA3P55318 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
FOXA3P55318 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA3P55318 AL049796.1-201ENST00000565336 1766 ntBASIC15.85■□□□□ 0.13
FOXA3P55318 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA3P55318 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
FOXA3P55318 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.84■□□□□ 0.13
FOXA3P55318 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
FOXA3P55318 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA3P55318 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXA3P55318 MIR4449-201ENST00000578365 66 ntBASIC15.84■□□□□ 0.13
FOXA3P55318 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA3P55318 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA3P55318 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
FOXA3P55318 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA3P55318 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA3P55318 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC15.83■□□□□ 0.13
FOXA3P55318 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA3P55318 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA3P55318 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA3P55318 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA3P55318 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.83■□□□□ 0.13
FOXA3P55318 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA3P55318 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms