Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDX1P52945 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.59■□□□□ 0.89
PDX1P52945 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDX1P52945 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDX1P52945 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDX1P52945 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDX1P52945 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDX1P52945 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDX1P52945 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDX1P52945 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.58■□□□□ 0.89
PDX1P52945 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.58■□□□□ 0.89
PDX1P52945 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.58■□□□□ 0.89
PDX1P52945 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
PDX1P52945 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PDX1P52945 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDX1P52945 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDX1P52945 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDX1P52945 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.58■□□□□ 0.88
PDX1P52945 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDX1P52945 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDX1P52945 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDX1P52945 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
PDX1P52945 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDX1P52945 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PDX1P52945 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PDX1P52945 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PDX1P52945 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.57■□□□□ 0.88
PDX1P52945 AC138907.5-202ENST00000569484 235 ntBASIC20.57■□□□□ 0.88
PDX1P52945 MIR4651-201ENST00000582622 73 ntBASIC20.57■□□□□ 0.88
PDX1P52945 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
PDX1P52945 AC010536.3-201ENST00000620306 533 ntBASIC20.57■□□□□ 0.88
PDX1P52945 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.57■□□□□ 0.88
PDX1P52945 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PDX1P52945 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDX1P52945 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.57■□□□□ 0.88
PDX1P52945 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.56■□□□□ 0.88
PDX1P52945 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 SLC29A4P1-201ENST00000398760 971 ntBASIC20.56■□□□□ 0.88
PDX1P52945 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
PDX1P52945 AC069152.1-201ENST00000438030 544 ntBASIC20.56■□□□□ 0.88
PDX1P52945 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.56■□□□□ 0.88
PDX1P52945 AC098934.4-201ENST00000564127 592 ntBASIC20.56■□□□□ 0.88
PDX1P52945 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.56■□□□□ 0.88
PDX1P52945 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.56■□□□□ 0.88
PDX1P52945 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.56■□□□□ 0.88
PDX1P52945 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.56■□□□□ 0.88
PDX1P52945 AP004607.7-201ENST00000527152 1677 ntBASIC20.56■□□□□ 0.88
PDX1P52945 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.56■□□□□ 0.88
PDX1P52945 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDX1P52945 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
PDX1P52945 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 GUSBP5-202ENST00000510805 1989 ntBASIC20.55■□□□□ 0.88
PDX1P52945 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.55■□□□□ 0.88
PDX1P52945 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.55■□□□□ 0.88
PDX1P52945 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.55■□□□□ 0.88
PDX1P52945 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDX1P52945 AC079834.2-201ENST00000609776 1949 ntBASIC20.55■□□□□ 0.88
PDX1P52945 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PDX1P52945 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.54■□□□□ 0.88
PDX1P52945 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.54■□□□□ 0.88
PDX1P52945 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PDX1P52945 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDX1P52945 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.53■□□□□ 0.88
PDX1P52945 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PDX1P52945 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDX1P52945 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDX1P52945 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.53■□□□□ 0.88
PDX1P52945 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.53■□□□□ 0.88
PDX1P52945 AF201337.1-201ENST00000520239 748 ntBASIC20.53■□□□□ 0.88
PDX1P52945 KRT18P20-201ENST00000548986 1279 ntBASIC20.53■□□□□ 0.88
PDX1P52945 AC133552.2-202ENST00000575694 574 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms