Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.54■□□□□ 0.88
HNF4AP41235 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.54■□□□□ 0.88
HNF4AP41235 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.54■□□□□ 0.88
HNF4AP41235 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.54■□□□□ 0.88
HNF4AP41235 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 AC009237.3-201ENST00000393279 1427 ntBASIC20.53■□□□□ 0.88
HNF4AP41235 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HNF4AP41235 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HNF4AP41235 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HNF4AP41235 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HNF4AP41235 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HNF4AP41235 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HNF4AP41235 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.53■□□□□ 0.88
HNF4AP41235 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.53■□□□□ 0.88
HNF4AP41235 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HNF4AP41235 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.53■□□□□ 0.88
HNF4AP41235 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.53■□□□□ 0.88
HNF4AP41235 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.53■□□□□ 0.88
HNF4AP41235 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.53■□□□□ 0.88
HNF4AP41235 AC003102.1-202ENST00000563394 1796 ntBASIC20.53■□□□□ 0.88
HNF4AP41235 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HNF4AP41235 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.53■□□□□ 0.88
HNF4AP41235 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.53■□□□□ 0.88
HNF4AP41235 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.53■□□□□ 0.88
HNF4AP41235 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.53■□□□□ 0.88
HNF4AP41235 AC019069.1-201ENST00000610008 1333 ntBASIC20.53■□□□□ 0.88
HNF4AP41235 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HNF4AP41235 AC026310.3-201ENST00000625186 2373 ntBASIC20.52■□□□□ 0.88
HNF4AP41235 Z98882.1-201ENST00000622160 2253 ntBASIC20.52■□□□□ 0.88
HNF4AP41235 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
HNF4AP41235 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HNF4AP41235 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.52■□□□□ 0.88
HNF4AP41235 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HNF4AP41235 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HNF4AP41235 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.52■□□□□ 0.88
HNF4AP41235 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.52■□□□□ 0.88
HNF4AP41235 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.52■□□□□ 0.88
HNF4AP41235 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HNF4AP41235 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HNF4AP41235 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.52■□□□□ 0.88
HNF4AP41235 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HNF4AP41235 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.52■□□□□ 0.87
HNF4AP41235 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.52■□□□□ 0.87
HNF4AP41235 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HNF4AP41235 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HNF4AP41235 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HNF4AP41235 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HNF4AP41235 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.51■□□□□ 0.87
HNF4AP41235 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.51■□□□□ 0.87
HNF4AP41235 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
HNF4AP41235 AC012414.1-201ENST00000556676 535 ntBASIC20.51■□□□□ 0.87
HNF4AP41235 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HNF4AP41235 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HNF4AP41235 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.51■□□□□ 0.87
HNF4AP41235 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
HNF4AP41235 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.51■□□□□ 0.87
HNF4AP41235 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.51■□□□□ 0.87
HNF4AP41235 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HNF4AP41235 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
HNF4AP41235 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.5■□□□□ 0.87
HNF4AP41235 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HNF4AP41235 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.5■□□□□ 0.87
HNF4AP41235 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HNF4AP41235 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HNF4AP41235 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.5■□□□□ 0.87
HNF4AP41235 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.5■□□□□ 0.87
HNF4AP41235 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.5■□□□□ 0.87
HNF4AP41235 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HNF4AP41235 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HNF4AP41235 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HNF4AP41235 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.49■□□□□ 0.87
HNF4AP41235 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.49■□□□□ 0.87
HNF4AP41235 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.49■□□□□ 0.87
HNF4AP41235 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
HNF4AP41235 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HNF4AP41235 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.49■□□□□ 0.87
HNF4AP41235 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HNF4AP41235 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.49■□□□□ 0.87
HNF4AP41235 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.49■□□□□ 0.87
HNF4AP41235 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HNF4AP41235 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HNF4AP41235 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HNF4AP41235 BX005040.4-201ENST00000637145 1518 ntBASIC20.48■□□□□ 0.87
HNF4AP41235 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HNF4AP41235 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HNF4AP41235 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.48■□□□□ 0.87
HNF4AP41235 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.48■□□□□ 0.87
HNF4AP41235 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.48■□□□□ 0.87
HNF4AP41235 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms