Protein–RNA interactions for Protein: P35914

HMGCL, Hydroxymethylglutaryl-CoA lyase, mitochondrial, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLP35914 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.18■□□□□ 0.98
HMGCLP35914 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.18■□□□□ 0.98
HMGCLP35914 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGCLP35914 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
HMGCLP35914 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGCLP35914 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGCLP35914 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGCLP35914 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGCLP35914 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGCLP35914 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.17■□□□□ 0.98
HMGCLP35914 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGCLP35914 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGCLP35914 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGCLP35914 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGCLP35914 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGCLP35914 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGCLP35914 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGCLP35914 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGCLP35914 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGCLP35914 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.16■□□□□ 0.98
HMGCLP35914 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGCLP35914 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGCLP35914 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGCLP35914 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.16■□□□□ 0.98
HMGCLP35914 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGCLP35914 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGCLP35914 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HMGCLP35914 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HMGCLP35914 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
HMGCLP35914 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGCLP35914 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGCLP35914 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.15■□□□□ 0.98
HMGCLP35914 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.15■□□□□ 0.98
HMGCLP35914 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGCLP35914 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCLP35914 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCLP35914 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.14■□□□□ 0.98
HMGCLP35914 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCLP35914 AP004607.4-201ENST00000530158 1459 ntBASIC21.14■□□□□ 0.98
HMGCLP35914 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCLP35914 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCLP35914 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.14■□□□□ 0.97
HMGCLP35914 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGCLP35914 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.14■□□□□ 0.97
HMGCLP35914 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.14■□□□□ 0.97
HMGCLP35914 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCLP35914 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCLP35914 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HMGCLP35914 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCLP35914 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCLP35914 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCLP35914 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 MIR935-201ENST00000401179 91 ntBASIC21.13■□□□□ 0.97
HMGCLP35914 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCLP35914 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGCLP35914 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.13■□□□□ 0.97
HMGCLP35914 MIR5787-201ENST00000611784 55 ntBASIC21.13■□□□□ 0.97
HMGCLP35914 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCLP35914 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HMGCLP35914 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.13■□□□□ 0.97
HMGCLP35914 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCLP35914 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCLP35914 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCLP35914 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCLP35914 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCLP35914 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
HMGCLP35914 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms