Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN4P29074 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.18■□□□□ 0.98
PTPN4P29074 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 pRNA.6-201ENST00000610482 90 ntBASIC21.18■□□□□ 0.98
PTPN4P29074 pRNA.5-201ENST00000612139 90 ntBASIC21.18■□□□□ 0.98
PTPN4P29074 pRNA.11-201ENST00000618423 90 ntBASIC21.18■□□□□ 0.98
PTPN4P29074 pRNA.13-201ENST00000619112 90 ntBASIC21.18■□□□□ 0.98
PTPN4P29074 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.18■□□□□ 0.98
PTPN4P29074 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN4P29074 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PTPN4P29074 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PTPN4P29074 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PTPN4P29074 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PTPN4P29074 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.17■□□□□ 0.98
PTPN4P29074 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.17■□□□□ 0.98
PTPN4P29074 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.17■□□□□ 0.98
PTPN4P29074 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.17■□□□□ 0.98
PTPN4P29074 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN4P29074 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.17■□□□□ 0.98
PTPN4P29074 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PTPN4P29074 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN4P29074 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN4P29074 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.16■□□□□ 0.98
PTPN4P29074 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN4P29074 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.16■□□□□ 0.98
PTPN4P29074 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN4P29074 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.15■□□□□ 0.98
PTPN4P29074 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PTPN4P29074 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.15■□□□□ 0.98
PTPN4P29074 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.15■□□□□ 0.98
PTPN4P29074 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN4P29074 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PTPN4P29074 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
PTPN4P29074 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTPN4P29074 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTPN4P29074 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PTPN4P29074 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
PTPN4P29074 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTPN4P29074 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN4P29074 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.14■□□□□ 0.97
PTPN4P29074 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
PTPN4P29074 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.14■□□□□ 0.97
PTPN4P29074 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.14■□□□□ 0.97
PTPN4P29074 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.14■□□□□ 0.97
PTPN4P29074 AC087623.3-201ENST00000607047 1098 ntBASIC21.14■□□□□ 0.97
PTPN4P29074 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
PTPN4P29074 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN4P29074 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN4P29074 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN4P29074 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.14■□□□□ 0.97
PTPN4P29074 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PTPN4P29074 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN4P29074 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN4P29074 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.13■□□□□ 0.97
PTPN4P29074 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN4P29074 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.13■□□□□ 0.97
PTPN4P29074 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.13■□□□□ 0.97
PTPN4P29074 AC144652.1-201ENST00000609974 1624 ntBASIC21.13■□□□□ 0.97
PTPN4P29074 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN4P29074 AC007952.6-201ENST00000573168 2673 ntBASIC21.13■□□□□ 0.97
PTPN4P29074 AC003957.1-201ENST00000625108 2673 ntBASIC21.13■□□□□ 0.97
PTPN4P29074 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN4P29074 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN4P29074 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PTPN4P29074 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.13■□□□□ 0.97
PTPN4P29074 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.12■□□□□ 0.97
PTPN4P29074 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN4P29074 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
PTPN4P29074 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.12■□□□□ 0.97
PTPN4P29074 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.12■□□□□ 0.97
PTPN4P29074 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN4P29074 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
PTPN4P29074 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.12■□□□□ 0.97
PTPN4P29074 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN4P29074 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.12■□□□□ 0.97
PTPN4P29074 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.12■□□□□ 0.97
PTPN4P29074 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms