Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
HMGB1P09429 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.06■■□□□ 1.6
HMGB1P09429 CPT2-209ENST00000636935 803 ntTSL 5 BASIC25.06■■□□□ 1.6
HMGB1P09429 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
HMGB1P09429 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC25.05■■□□□ 1.6
HMGB1P09429 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.05■■□□□ 1.6
HMGB1P09429 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
HMGB1P09429 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.05■■□□□ 1.6
HMGB1P09429 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
HMGB1P09429 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.05■■□□□ 1.6
HMGB1P09429 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 AC027612.3-201ENST00000413684 1047 ntBASIC25.05■■□□□ 1.6
HMGB1P09429 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.05■■□□□ 1.6
HMGB1P09429 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.05■■□□□ 1.6
HMGB1P09429 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.05■■□□□ 1.6
HMGB1P09429 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGB1P09429 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC25.04■■□□□ 1.6
HMGB1P09429 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
HMGB1P09429 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.04■■□□□ 1.6
HMGB1P09429 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.04■■□□□ 1.6
HMGB1P09429 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.04■■□□□ 1.6
HMGB1P09429 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.04■■□□□ 1.6
HMGB1P09429 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGB1P09429 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.03■■□□□ 1.6
HMGB1P09429 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 MIR6084-201ENST00000622012 110 ntBASIC25.03■■□□□ 1.6
HMGB1P09429 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGB1P09429 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.03■■□□□ 1.6
HMGB1P09429 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.02■■□□□ 1.6
HMGB1P09429 NARF-205ENST00000412079 1760 ntTSL 5 BASIC25.02■■□□□ 1.6
HMGB1P09429 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGB1P09429 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC25.02■■□□□ 1.6
HMGB1P09429 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
HMGB1P09429 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.01■■□□□ 1.59
HMGB1P09429 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 FEM1AP4-201ENST00000443167 1987 ntBASIC25.01■■□□□ 1.59
HMGB1P09429 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
HMGB1P09429 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC25.01■■□□□ 1.59
HMGB1P09429 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC25.01■■□□□ 1.59
HMGB1P09429 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGB1P09429 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
HMGB1P09429 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25■■□□□ 1.59
HMGB1P09429 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC25■■□□□ 1.59
HMGB1P09429 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC25■■□□□ 1.59
HMGB1P09429 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 DYM-203ENST00000442713 2147 ntTSL 2 BASIC25■■□□□ 1.59
HMGB1P09429 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HMGB1P09429 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGB1P09429 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
HMGB1P09429 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HMGB1P09429 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC24.99■■□□□ 1.59
HMGB1P09429 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC24.99■■□□□ 1.59
HMGB1P09429 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HMGB1P09429 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGB1P09429 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms