Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPSF4O95639 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.16■□□□□ 0.82
CPSF4O95639 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CPSF4O95639 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CPSF4O95639 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.16■□□□□ 0.82
CPSF4O95639 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CPSF4O95639 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.15■□□□□ 0.82
CPSF4O95639 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.15■□□□□ 0.82
CPSF4O95639 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CPSF4O95639 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPSF4O95639 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CPSF4O95639 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CPSF4O95639 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.14■□□□□ 0.81
CPSF4O95639 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.14■□□□□ 0.81
CPSF4O95639 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.14■□□□□ 0.81
CPSF4O95639 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 AL136116.3-201ENST00000402907 1138 ntBASIC20.14■□□□□ 0.81
CPSF4O95639 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.14■□□□□ 0.81
CPSF4O95639 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CPSF4O95639 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.14■□□□□ 0.81
CPSF4O95639 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.14■□□□□ 0.81
CPSF4O95639 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CPSF4O95639 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.13■□□□□ 0.81
CPSF4O95639 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CPSF4O95639 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.13■□□□□ 0.81
CPSF4O95639 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.13■□□□□ 0.81
CPSF4O95639 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.13■□□□□ 0.81
CPSF4O95639 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.13■□□□□ 0.81
CPSF4O95639 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
CPSF4O95639 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CPSF4O95639 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CPSF4O95639 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.12■□□□□ 0.81
CPSF4O95639 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.12■□□□□ 0.81
CPSF4O95639 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CPSF4O95639 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.12■□□□□ 0.81
CPSF4O95639 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CPSF4O95639 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.11■□□□□ 0.81
CPSF4O95639 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CPSF4O95639 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.11■□□□□ 0.81
CPSF4O95639 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CPSF4O95639 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.11■□□□□ 0.81
CPSF4O95639 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.11■□□□□ 0.81
CPSF4O95639 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 AC003102.1-202ENST00000563394 1796 ntBASIC20.11■□□□□ 0.81
CPSF4O95639 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CPSF4O95639 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.1■□□□□ 0.81
CPSF4O95639 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CPSF4O95639 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.1■□□□□ 0.81
CPSF4O95639 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.1■□□□□ 0.81
CPSF4O95639 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.1■□□□□ 0.81
CPSF4O95639 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.1■□□□□ 0.81
CPSF4O95639 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.1■□□□□ 0.81
CPSF4O95639 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.1■□□□□ 0.81
CPSF4O95639 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CPSF4O95639 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.1■□□□□ 0.81
CPSF4O95639 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CPSF4O95639 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.09■□□□□ 0.81
CPSF4O95639 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4O95639 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4O95639 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CPSF4O95639 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4O95639 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms