Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SIX3O95343 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX3O95343 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.72■□□□□ 0.91
SIX3O95343 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX3O95343 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX3O95343 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.72■□□□□ 0.91
SIX3O95343 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.72■□□□□ 0.91
SIX3O95343 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX3O95343 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX3O95343 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX3O95343 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX3O95343 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX3O95343 AC096631.2-201ENST00000436136 790 ntBASIC20.71■□□□□ 0.91
SIX3O95343 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX3O95343 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.71■□□□□ 0.91
SIX3O95343 AC008764.7-201ENST00000593779 1081 ntBASIC20.71■□□□□ 0.91
SIX3O95343 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.71■□□□□ 0.91
SIX3O95343 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.71■□□□□ 0.91
SIX3O95343 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX3O95343 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX3O95343 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX3O95343 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SIX3O95343 AC008406.3-201ENST00000620001 1374 ntBASIC20.71■□□□□ 0.91
SIX3O95343 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.7■□□□□ 0.9
SIX3O95343 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SIX3O95343 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX3O95343 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX3O95343 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
SIX3O95343 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SIX3O95343 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.7■□□□□ 0.9
SIX3O95343 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SIX3O95343 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX3O95343 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.7■□□□□ 0.9
SIX3O95343 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SIX3O95343 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX3O95343 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX3O95343 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.69■□□□□ 0.9
SIX3O95343 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SIX3O95343 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX3O95343 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.69■□□□□ 0.9
SIX3O95343 IGHV3-19-201ENST00000521488 291 ntBASIC20.69■□□□□ 0.9
SIX3O95343 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SIX3O95343 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX3O95343 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SIX3O95343 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
SIX3O95343 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
SIX3O95343 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SIX3O95343 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
SIX3O95343 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX3O95343 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SIX3O95343 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
SIX3O95343 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.68■□□□□ 0.9
SIX3O95343 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 PBX2P1-201ENST00000493219 1291 ntBASIC20.68■□□□□ 0.9
SIX3O95343 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SIX3O95343 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.68■□□□□ 0.9
SIX3O95343 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.68■□□□□ 0.9
SIX3O95343 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SIX3O95343 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX3O95343 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SIX3O95343 AC099791.1-201ENST00000416440 715 ntBASIC20.67■□□□□ 0.9
SIX3O95343 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.67■□□□□ 0.9
SIX3O95343 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.67■□□□□ 0.9
SIX3O95343 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SIX3O95343 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX3O95343 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms