Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 PTOV1-202ENST00000594151 995 ntTSL 513.06□□□□□ -0.321e-6■□□□□ 9.9
CDC40O60508 SLC4A7-209ENST00000438530 3825 ntTSL 1 (best)12.93□□□□□ -0.341e-6■□□□□ 9.9
CDC40O60508 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.341e-6■□□□□ 9.9
CDC40O60508 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.351e-6■□□□□ 9.9
CDC40O60508 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.89□□□□□ -0.351e-6■□□□□ 9.9
CDC40O60508 USP36-221ENST00000592231 2479 ntTSL 212.85□□□□□ -0.352e-8■□□□□ 9.9
CDC40O60508 TCEA1-207ENST00000521086 2966 ntTSL 1 (best)12.6□□□□□ -0.391e-6■□□□□ 9.9
CDC40O60508 SLC4A7-215ENST00000457377 3600 ntTSL 1 (best)12.59□□□□□ -0.391e-6■□□□□ 9.9
CDC40O60508 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.391e-6■□□□□ 9.9
CDC40O60508 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.411e-6■□□□□ 9.9
CDC40O60508 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC12.4□□□□□ -0.421e-6■□□□□ 9.9
CDC40O60508 PTOV1-218ENST00000601612 1480 ntTSL 212.25□□□□□ -0.451e-6■□□□□ 9.9
CDC40O60508 RPL10A-202ENST00000464112 1063 ntTSL 1 (best)11.95□□□□□ -0.51e-6■□□□□ 9.9
CDC40O60508 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC11.88□□□□□ -0.511e-6■□□□□ 9.9
CDC40O60508 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.531e-6■□□□□ 9.9
CDC40O60508 PTOV1-215ENST00000600793 426 ntTSL 511.56□□□□□ -0.561e-6■□□□□ 9.9
CDC40O60508 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC11.56□□□□□ -0.561e-6■□□□□ 9.9
CDC40O60508 ATAD2-202ENST00000517666 4995 ntTSL 511.47□□□□□ -0.571e-6■□□□□ 9.9
CDC40O60508 IL32-204ENST00000396887 789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.581e-6■□□□□ 9.9
CDC40O60508 ECHDC1-209ENST00000454591 1515 ntTSL 2 BASIC11.38□□□□□ -0.591e-6■□□□□ 9.9
CDC40O60508 RPL10A-201ENST00000322203 716 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.691e-6■□□□□ 9.9
CDC40O60508 TMEM63A-201ENST00000366835 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.781e-6■□□□□ 9.9
CDC40O60508 IL32-229ENST00000549213 654 ntAPPRIS ALT2 TSL 3 BASIC10.15□□□□□ -0.781e-6■□□□□ 9.9
CDC40O60508 ITPR2-201ENST00000242737 581 ntTSL 1 (best) BASIC10.11□□□□□ -0.791e-6■□□□□ 9.9
CDC40O60508 OSBPL2-202ENST00000358053 3936 ntTSL 1 (best) BASIC9.86□□□□□ -0.831e-6■□□□□ 9.9
CDC40O60508 IL32-216ENST00000529699 672 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.891e-6■□□□□ 9.9
CDC40O60508 IL32-225ENST00000548246 447 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.891e-6■□□□□ 9.9
CDC40O60508 USP36-219ENST00000591052 427 ntTSL 39.36□□□□□ -0.912e-8■□□□□ 9.9
CDC40O60508 OSBPL2-211ENST00000622332 754 ntTSL 39.28□□□□□ -0.921e-6■□□□□ 9.9
CDC40O60508 USP36-208ENST00000587379 606 ntTSL 39.06□□□□□ -0.962e-8■□□□□ 9.9
CDC40O60508 ATAD2-205ENST00000521903 5143 ntTSL 1 (best) BASIC8.18□□□□□ -1.11e-6■□□□□ 9.9
CDC40O60508 USP36-211ENST00000588130 602 ntTSL 28.08□□□□□ -1.122e-8■□□□□ 9.9
CDC40O60508 ITPR2-209ENST00000545235 540 ntTSL 1 (best)7.79□□□□□ -1.161e-6■□□□□ 9.9
CDC40O60508 ECHDC1-207ENST00000430841 1009 ntAPPRIS P3 TSL 5 BASIC7.43□□□□□ -1.221e-6■□□□□ 9.9
CDC40O60508 ECHDC1-212ENST00000461239 617 ntTSL 57.19□□□□□ -1.261e-6■□□□□ 9.9
CDC40O60508 NRDC-210ENST00000485608 3149 ntTSL 26.45□□□□□ -1.381e-6■□□□□ 9.9
CDC40O60508 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.41e-6■□□□□ 9.9
CDC40O60508 ATAD2-203ENST00000519124 4650 ntTSL 1 (best)6.15□□□□□ -1.421e-6■□□□□ 9.9
CDC40O60508 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC5.75□□□□□ -1.491e-6■□□□□ 9.9
CDC40O60508 SLC4A7-205ENST00000428179 3224 ntTSL 55.63□□□□□ -1.511e-6■□□□□ 9.9
CDC40O60508 ECHDC1-208ENST00000436638 766 ntAPPRIS ALT2 TSL 35.56□□□□□ -1.521e-6■□□□□ 9.9
CDC40O60508 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.531e-6■□□□□ 9.9
CDC40O60508 ECHDC1-215ENST00000475319 1543 ntTSL 25.45□□□□□ -1.541e-6■□□□□ 9.9
CDC40O60508 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.15□□□□□ -1.581e-6■□□□□ 9.9
CDC40O60508 ECHDC1-206ENST00000417628 767 ntTSL 54.91□□□□□ -1.621e-6■□□□□ 9.9
CDC40O60508 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.691e-6■□□□□ 9.9
CDC40O60508 ECHDC1-204ENST00000368292 854 ntTSL 54.26□□□□□ -1.731e-6■□□□□ 9.9
CDC40O60508 SLC4A7-202ENST00000419036 6447 ntTSL 1 (best)4.02□□□□□ -1.771e-6■□□□□ 9.9
CDC40O60508 ECHDC1-223ENST00000534442 577 ntTSL 53.79□□□□□ -1.81e-6■□□□□ 9.9
CDC40O60508 ECHDC1-211ENST00000460558 301 ntTSL 53.77□□□□□ -1.811e-6■□□□□ 9.9
CDC40O60508 NRDC-209ENST00000483007 810 ntTSL 43.17□□□□□ -1.91e-6■□□□□ 9.9
CDC40O60508 ECHDC1-205ENST00000368295 1966 ntTSL 53□□□□□ -1.931e-6■□□□□ 9.9
CDC40O60508 SLC4A7-218ENST00000491211 574 ntTSL 32.64□□□□□ -1.991e-6■□□□□ 9.9
CDC40O60508 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.6□□□□□ -1.991e-6■□□□□ 9.9
CDC40O60508 ECHDC1-218ENST00000525745 601 ntTSL 52.2□□□□□ -2.061e-6■□□□□ 9.9
CDC40O60508 ECHDC1-219ENST00000526299 534 ntTSL 50.92□□□□□ -2.261e-6■□□□□ 9.9
CDC40O60508 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.321e-6■□□□□ 9.8
CDC40O60508 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.011e-6■□□□□ 9.8
CDC40O60508 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.111e-6■□□□□ 9.8
CDC40O60508 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.078e-8■□□□□ 9.8
CDC40O60508 SNX5-214ENST00000490175 2025 ntTSL 1 (best)14.66□□□□□ -0.068e-8■□□□□ 9.8
CDC40O60508 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.178e-8■□□□□ 9.8
CDC40O60508 HNRNPDL-209ENST00000630114 1433 ntTSL 518.96■□□□□ 0.631e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-203ENST00000502762 2356 ntTSL 1 (best)18.66■□□□□ 0.581e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.151e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-202ENST00000349655 1402 ntTSL 1 (best)15.77■□□□□ 0.121e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.061e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-205ENST00000514511 1143 ntTSL 214.9□□□□□ -0.021e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.091e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC12.81□□□□□ -0.361e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-201ENST00000295470 3781 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.81e-7■□□□□ 9.8
CDC40O60508 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.141e-7■□□□□ 9.8
CDC40O60508 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.853e-7■□□□□ 9.8
CDC40O60508 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.01■□□□□ 0.793e-7■□□□□ 9.8
CDC40O60508 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.33■□□□□ 0.683e-7■□□□□ 9.8
CDC40O60508 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.46■□□□□ 0.553e-7■□□□□ 9.8
CDC40O60508 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC12.38□□□□□ -0.433e-7■□□□□ 9.8
CDC40O60508 XBP1-206ENST00000484256 2173 ntTSL 210.77□□□□□ -0.683e-7■□□□□ 9.8
CDC40O60508 SYNJ2-202ENST00000367112 5091 ntTSL 29.97□□□□□ -0.812e-9■□□□□ 9.7
CDC40O60508 SYNJ2-204ENST00000367122 3029 ntTSL 1 (best) BASIC8.75□□□□□ -1.012e-9■□□□□ 9.7
CDC40O60508 HDLBP-238ENST00000479894 840 ntTSL 514.47□□□□□ -0.095e-9■□□□□ 9.7
CDC40O60508 HDLBP-241ENST00000487169 4339 ntTSL 212.7□□□□□ -0.385e-9■□□□□ 9.7
CDC40O60508 HDLBP-239ENST00000483086 620 ntTSL 311.13□□□□□ -0.635e-9■□□□□ 9.7
CDC40O60508 PRPF8-206ENST00000572723 959 ntTSL 210.87□□□□□ -0.675e-9■□□□□ 9.7
CDC40O60508 PRPF8-212ENST00000575116 460 ntTSL 310.83□□□□□ -0.685e-9■□□□□ 9.7
CDC40O60508 HDLBP-232ENST00000470482 624 ntTSL 210.75□□□□□ -0.695e-9■□□□□ 9.7
CDC40O60508 DAZAP1-204ENST00000586579 619 ntTSL 320.9■□□□□ 0.944e-7■□□□□ 9.7
CDC40O60508 DAZAP1-210ENST00000592453 1021 ntTSL 513.65□□□□□ -0.224e-7■□□□□ 9.7
CDC40O60508 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.41■■□□□ 1.181e-6■□□□□ 9.6
CDC40O60508 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.981e-6■□□□□ 9.6
CDC40O60508 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.881e-6■□□□□ 9.6
CDC40O60508 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.721e-6■□□□□ 9.6
CDC40O60508 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.691e-8■□□□□ 9.6
CDC40O60508 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.261e-8■□□□□ 9.6
CDC40O60508 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)13.67□□□□□ -0.221e-8■□□□□ 9.6
CDC40O60508 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.572e-7■□□□□ 9.6
CDC40O60508 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.582e-7■□□□□ 9.6
CDC40O60508 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.672e-7■□□□□ 9.6
CDC40O60508 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC10.5□□□□□ -0.732e-7■□□□□ 9.6
CDC40O60508 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC10.02□□□□□ -0.812e-7■□□□□ 9.6
Retrieved 100 of 5,364 protein–RNA pairs in 485.8 ms