RNA–Protein interactions for RNA: ENST00000526299.5

ECHDC1-219, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-219ENST00000526299 AEBP2Q6ZN18 517 aaPredicted RBP23.69■■□□□ 1.38
ECHDC1-219ENST00000526299 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
ECHDC1-219ENST00000526299 SENP3Q9H4L4 574 aaPredicted RBP20.16■□□□□ 0.82
ECHDC1-219ENST00000526299 PHF23Q9BUL5 403 aaPredicted RBP19.92■□□□□ 0.78
ECHDC1-219ENST00000526299 FOXD1Q16676 465 aa18.86■□□□□ 0.61
ECHDC1-219ENST00000526299 PLPPR3Q6T4P5 718 aa17.76■□□□□ 0.43
ECHDC1-219ENST00000526299 MSH5O43196 834 aa17.64■□□□□ 0.41
ECHDC1-219ENST00000526299 PIAS4Q8N2W9 510 aaPredicted RBP17.58■□□□□ 0.4
ECHDC1-219ENST00000526299 PPP6R1Q9UPN7 881 aa17.56■□□□□ 0.4
ECHDC1-219ENST00000526299 POTEDQ86YR6 584 aa17.5■□□□□ 0.39
ECHDC1-219ENST00000526299 ADRA2BP18089 450 aa17.49■□□□□ 0.39
ECHDC1-219ENST00000526299 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
ECHDC1-219ENST00000526299 DMRT2Q9Y5R5 561 aa15.98■□□□□ 0.15
ECHDC1-219ENST00000526299 SCAF1Q9H7N4 1312 aaKnown RBP15.93■□□□□ 0.14
ECHDC1-219ENST00000526299 PPP4R3CPQ6ZMV5 832 aa15.58■□□□□ 0.08
ECHDC1-219ENST00000526299 DCAF8L1A6NGE4 600 aa15.38■□□□□ 0.05
ECHDC1-219ENST00000526299 HOXD11P31277 338 aaPredicted RBP15.34■□□□□ 0.05
ECHDC1-219ENST00000526299 CNKSR2Q8WXI2 1034 aa15.29■□□□□ 0.04
ECHDC1-219ENST00000526299 CACNB1Q02641 598 aaPredicted RBP15.27■□□□□ 0.04
ECHDC1-219ENST00000526299 RNF216Q9NWF9 866 aaPredicted RBP15.17■□□□□ 0.02
ECHDC1-219ENST00000526299 RNF39Q9H2S5 420 aa15.07■□□□□ 0
ECHDC1-219ENST00000526299 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
ECHDC1-219ENST00000526299 C1QBPQ07021 282 aaKnown RBP14.82□□□□□ -0.04
ECHDC1-219ENST00000526299 DNAJC5BQ9UF47 199 aa14.77□□□□□ -0.05
ECHDC1-219ENST00000526299 NPM3O75607 178 aaKnown RBP14.73□□□□□ -0.05
ECHDC1-219ENST00000526299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.078e-8■■■□□ 16.3
ECHDC1-219ENST00000526299 KCNA4P22459 653 aa14.35□□□□□ -0.11
ECHDC1-219ENST00000526299 U3KPZ7 1027 aaPredicted RBP14.32□□□□□ -0.12
ECHDC1-219ENST00000526299 SPINK5Q9NQ38 1064 aaPredicted RBP14.18□□□□□ -0.14
ECHDC1-219ENST00000526299 CAPN15O75808 1086 aa14.14□□□□□ -0.15
ECHDC1-219ENST00000526299 SLC4A2P04920 1241 aa14.11□□□□□ -0.15
ECHDC1-219ENST00000526299 DSG3P32926 999 aa14.07□□□□□ -0.16
ECHDC1-219ENST00000526299 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
ECHDC1-219ENST00000526299 ABCB7O75027 752 aa13.83□□□□□ -0.2
ECHDC1-219ENST00000526299 APLP2Q06481 763 aa13.83□□□□□ -0.2
ECHDC1-219ENST00000526299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.8□□□□□ -0.2
ECHDC1-219ENST00000526299 HNRNPUL2Q1KMD3 747 aaKnown RBP13.8□□□□□ -0.2
ECHDC1-219ENST00000526299 ZNF219Q9P2Y4 722 aaPredicted RBP13.8□□□□□ -0.2
ECHDC1-219ENST00000526299 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
ECHDC1-219ENST00000526299 POTEHQ6S545 545 aa13.68□□□□□ -0.22
ECHDC1-219ENST00000526299 MYCNP04198 464 aaPredicted RBP13.6□□□□□ -0.23
ECHDC1-219ENST00000526299 SLC4A1APQ9BWU0 796 aaKnown RBP13.5□□□□□ -0.25
ECHDC1-219ENST00000526299 POLA2Q14181 598 aa13.47□□□□□ -0.25
ECHDC1-219ENST00000526299 FOXD4L1Q9NU39 408 aa13.4□□□□□ -0.26
ECHDC1-219ENST00000526299 RBM42Q9BTD8 480 aaKnown RBP13.39□□□□□ -0.27
ECHDC1-219ENST00000526299 ATF5Q9Y2D1 282 aaPredicted RBP13.36□□□□□ -0.27
ECHDC1-219ENST00000526299 ZBTB22O15209 634 aa13.21□□□□□ -0.29
ECHDC1-219ENST00000526299 CHRDL2Q6WN34 429 aa13.19□□□□□ -0.3
ECHDC1-219ENST00000526299 ZBTB12Q9Y330 459 aaPredicted RBP13.13□□□□□ -0.31
ECHDC1-219ENST00000526299 AKT1S1Q96B36 256 aa13.07□□□□□ -0.32
ECHDC1-219ENST00000526299 OSCARQ8IYS5 282 aa13.06□□□□□ -0.32
ECHDC1-219ENST00000526299 REM2Q8IYK8 340 aaPredicted RBP12.97□□□□□ -0.33
ECHDC1-219ENST00000526299 ATXN8OSP0DMR3 200 aa12.96□□□□□ -0.33
ECHDC1-219ENST00000526299 PIP4P2Q8N4L2 257 aa12.86□□□□□ -0.35
ECHDC1-219ENST00000526299 PITPNM1O00562 1244 aa12.85□□□□□ -0.35
ECHDC1-219ENST00000526299 FBLN2P98095 1184 aa12.77□□□□□ -0.37
ECHDC1-219ENST00000526299 SP7Q8TDD2 431 aaPredicted RBP12.75□□□□□ -0.37
ECHDC1-219ENST00000526299 FXR2P51116 673 aaKnown RBP eCLIP12.74□□□□□ -0.37
ECHDC1-219ENST00000526299 SPDYE2BA6NHP3 402 aa12.73□□□□□ -0.37
ECHDC1-219ENST00000526299 SPDYE6P0CI01 402 aa12.73□□□□□ -0.37
ECHDC1-219ENST00000526299 SPDYE2Q495Y8 402 aa12.73□□□□□ -0.37
ECHDC1-219ENST00000526299 MKRN4PQ13434 485 aaPredicted RBP12.72□□□□□ -0.37
ECHDC1-219ENST00000526299 HAX1O00165 279 aa12.66□□□□□ -0.38
ECHDC1-219ENST00000526299 ZNF692Q9BU19 519 aaPredicted RBP12.59□□□□□ -0.39
ECHDC1-219ENST00000526299 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
ECHDC1-219ENST00000526299 SSUH2Q9Y2M2 353 aa12.57□□□□□ -0.4
ECHDC1-219ENST00000526299 SPDYE1Q8NFV5 336 aaPredicted RBP12.55□□□□□ -0.4
ECHDC1-219ENST00000526299 EVX2Q03828 476 aa12.54□□□□□ -0.4
ECHDC1-219ENST00000526299 PRKAR2AP13861 404 aaKnown RBP12.51□□□□□ -0.41
ECHDC1-219ENST00000526299 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.41
ECHDC1-219ENST00000526299 PABPN1Q86U42 306 aaKnown RBP eCLIP12.41□□□□□ -0.42
ECHDC1-219ENST00000526299 CHADLQ6NUI6 762 aa12.38□□□□□ -0.43
ECHDC1-219ENST00000526299 C19orf67A6NJJ6 358 aa12.34□□□□□ -0.43
ECHDC1-219ENST00000526299 PRR29P0C7W0 189 aa12.33□□□□□ -0.44
ECHDC1-219ENST00000526299 EHMT2Q96KQ7 1210 aa12.25□□□□□ -0.45
ECHDC1-219ENST00000526299 GABBR2O75899 941 aa12.21□□□□□ -0.45
ECHDC1-219ENST00000526299 FARP1Q9Y4F1 1045 aaPredicted RBP12.14□□□□□ -0.47
ECHDC1-219ENST00000526299 CD44P16070 742 aaKnown RBP12.11□□□□□ -0.47
ECHDC1-219ENST00000526299 SPDYE4A6NLX3 237 aa12.03□□□□□ -0.48
ECHDC1-219ENST00000526299 CREBZFQ9NS37 354 aa12.01□□□□□ -0.49
ECHDC1-219ENST00000526299 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
ECHDC1-219ENST00000526299 POTEIP0CG38 1075 aa11.98□□□□□ -0.49
ECHDC1-219ENST00000526299 LHX8Q68G74 356 aa11.97□□□□□ -0.49
ECHDC1-219ENST00000526299 ZRANB1Q9UGI0 708 aa11.92□□□□□ -0.5
ECHDC1-219ENST00000526299 ZNF579Q8NAF0 562 aaKnown RBP11.89□□□□□ -0.51
ECHDC1-219ENST00000526299 CLCN6P51797 869 aa11.88□□□□□ -0.51
ECHDC1-219ENST00000526299 DCBLD2Q96PD2 775 aa11.84□□□□□ -0.51
ECHDC1-219ENST00000526299 GALR2O43603 387 aaPredicted RBP11.79□□□□□ -0.52
ECHDC1-219ENST00000526299 MNX1P50219 401 aaPredicted RBP11.78□□□□□ -0.52
ECHDC1-219ENST00000526299 PAK3O75914 559 aaPredicted RBP11.76□□□□□ -0.53
ECHDC1-219ENST00000526299 PHF12Q96QT6 1004 aa11.76□□□□□ -0.53
ECHDC1-219ENST00000526299 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
ECHDC1-219ENST00000526299 PROM2Q8N271 834 aa11.69□□□□□ -0.54
ECHDC1-219ENST00000526299 PELP1Q8IZL8 1130 aaKnown RBP11.59□□□□□ -0.55
ECHDC1-219ENST00000526299 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
ECHDC1-219ENST00000526299 POTEB2H3BUK9 544 aa11.58□□□□□ -0.56
ECHDC1-219ENST00000526299 TSPYL2Q9H2G4 693 aaPredicted RBP11.58□□□□□ -0.56
ECHDC1-219ENST00000526299 OTUD5Q96G74 571 aa11.54□□□□□ -0.56
ECHDC1-219ENST00000526299 ASTLQ6HA08 431 aaPredicted RBP11.51□□□□□ -0.57
ECHDC1-219ENST00000526299 CCDC61Q9Y6R9 512 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms