RNA–Protein interactions for RNA: ENST00000436638.5

ECHDC1-208, Transcript of ethylmalonyl-CoA decarboxylase 1, human

APPRIS ALT2 TSL 3

Gene ECHDC1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-208	ENST00000436638	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.06	■□□□□ 0.96
ECHDC1-208	ENST00000436638	CHIC1	Q5VXU3	224 aa		20.43	■□□□□ 0.86
ECHDC1-208	ENST00000436638	PHF23	Q9BUL5	403 aa	Predicted RBP	17.96	■□□□□ 0.47
ECHDC1-208	ENST00000436638	SENP3	Q9H4L4	574 aa	Predicted RBP	17.91	■□□□□ 0.46
ECHDC1-208	ENST00000436638	FOXD1	Q16676	465 aa		16.63	■□□□□ 0.25
ECHDC1-208	ENST00000436638	PLPPR3	Q6T4P5	718 aa		16.55	■□□□□ 0.24
ECHDC1-208	ENST00000436638	ADRA2B	P18089	450 aa		15.91	■□□□□ 0.14
ECHDC1-208	ENST00000436638	PPP6R1	Q9UPN7	881 aa		15.91	■□□□□ 0.14
ECHDC1-208	ENST00000436638	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.69	■□□□□ 0.1
ECHDC1-208	ENST00000436638	MSH5	O43196	834 aa		15.39	■□□□□ 0.05
ECHDC1-208	ENST00000436638	PPP4R3CP	Q6ZMV5	832 aa		14.58	□□□□□ -0.08
ECHDC1-208	ENST00000436638	SCAF1	Q9H7N4	1312 aa	Known RBP	14.56	□□□□□ -0.08
ECHDC1-208	ENST00000436638	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.48	□□□□□ -0.09
ECHDC1-208	ENST00000436638	NISCH	Q9Y2I1	1504 aa		14.31	□□□□□ -0.12
ECHDC1-208	ENST00000436638	POTED	Q86YR6	584 aa		14.27	□□□□□ -0.13
ECHDC1-208	ENST00000436638	DMRT2	Q9Y5R5	561 aa		14.26	□□□□□ -0.13
ECHDC1-208	ENST00000436638	CNKSR2	Q8WXI2	1034 aa		14.19	□□□□□ -0.14
ECHDC1-208	ENST00000436638	NCBP3	Q53F19	620 aa	Known RBP	14.17	□□□□□ -0.14
ECHDC1-208	ENST00000436638	KCNA4	P22459	653 aa		14.08	□□□□□ -0.16
ECHDC1-208	ENST00000436638	NPM3	O75607	178 aa	Known RBP	13.93	□□□□□ -0.18
ECHDC1-208	ENST00000436638	RNF216	Q9NWF9	866 aa	Predicted RBP	13.93	□□□□□ -0.18
ECHDC1-208	ENST00000436638	HOXD11	P31277	338 aa	Predicted RBP	13.89	□□□□□ -0.19
ECHDC1-208	ENST00000436638	DCAF8L1	A6NGE4	600 aa		13.76	□□□□□ -0.21
ECHDC1-208	ENST00000436638	DNAJC5B	Q9UF47	199 aa		13.45	□□□□□ -0.26
ECHDC1-208	ENST00000436638	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.4	□□□□□ -0.26
ECHDC1-208	ENST00000436638	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.33	□□□□□ -0.28	8e-8	■■■■□ 21.5
ECHDC1-208	ENST00000436638	SLC4A2	P04920	1241 aa		13.18	□□□□□ -0.3
ECHDC1-208	ENST00000436638	RNF39	Q9H2S5	420 aa		13.16	□□□□□ -0.3
ECHDC1-208	ENST00000436638		U3KPZ7	1027 aa	Predicted RBP	13.03	□□□□□ -0.32
ECHDC1-208	ENST00000436638	C1QBP	Q07021	282 aa	Known RBP	13.01	□□□□□ -0.33
ECHDC1-208	ENST00000436638	CACNB1	Q02641	598 aa	Predicted RBP	12.99	□□□□□ -0.33
ECHDC1-208	ENST00000436638	FOXD4L1	Q9NU39	408 aa		12.99	□□□□□ -0.33
ECHDC1-208	ENST00000436638	ZBTB22	O15209	634 aa		12.93	□□□□□ -0.34
ECHDC1-208	ENST00000436638	EHMT2	Q96KQ7	1210 aa		12.89	□□□□□ -0.35
ECHDC1-208	ENST00000436638	MYCN	P04198	464 aa	Predicted RBP	12.88	□□□□□ -0.35
ECHDC1-208	ENST00000436638	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.84	□□□□□ -0.35
ECHDC1-208	ENST00000436638	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.84	□□□□□ -0.35
ECHDC1-208	ENST00000436638	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.79	□□□□□ -0.36
ECHDC1-208	ENST00000436638	CSRNP3	Q8WYN3	585 aa		12.76	□□□□□ -0.37
ECHDC1-208	ENST00000436638	APLP2	Q06481	763 aa		12.75	□□□□□ -0.37
ECHDC1-208	ENST00000436638	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.74	□□□□□ -0.37
ECHDC1-208	ENST00000436638	CAPN15	O75808	1086 aa		12.73	□□□□□ -0.37
ECHDC1-208	ENST00000436638	TRH	P20396	242 aa	Predicted RBP	12.64	□□□□□ -0.39
ECHDC1-208	ENST00000436638	CCDC180	Q9P1Z9	1646 aa		12.63	□□□□□ -0.39
ECHDC1-208	ENST00000436638	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.58	□□□□□ -0.4
ECHDC1-208	ENST00000436638	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.55	□□□□□ -0.4
ECHDC1-208	ENST00000436638	ATXN8OS	P0DMR3	200 aa		12.53	□□□□□ -0.4
ECHDC1-208	ENST00000436638	DSG3	P32926	999 aa		12.5	□□□□□ -0.41
ECHDC1-208	ENST00000436638	ABCB7	O75027	752 aa		12.48	□□□□□ -0.41
ECHDC1-208	ENST00000436638	POLA2	Q14181	598 aa		12.38	□□□□□ -0.43
ECHDC1-208	ENST00000436638	ABCC9	O60706	1549 aa		12.26	□□□□□ -0.45
ECHDC1-208	ENST00000436638	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.14	□□□□□ -0.47
ECHDC1-208	ENST00000436638	FBLN2	P98095	1184 aa		12.07	□□□□□ -0.48
ECHDC1-208	ENST00000436638	DCAF8L2	P0C7V8	631 aa		12.01	□□□□□ -0.49
ECHDC1-208	ENST00000436638	MKRN4P	Q13434	485 aa	Predicted RBP	11.98	□□□□□ -0.49
ECHDC1-208	ENST00000436638	OSCAR	Q8IYS5	282 aa		11.95	□□□□□ -0.5
ECHDC1-208	ENST00000436638	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.94	□□□□□ -0.5
ECHDC1-208	ENST00000436638	RBM42	Q9BTD8	480 aa	Known RBP	11.92	□□□□□ -0.5
ECHDC1-208	ENST00000436638	NACAD	O15069	1562 aa		11.87	□□□□□ -0.51
ECHDC1-208	ENST00000436638	RB1CC1	Q8TDY2	1594 aa		11.85	□□□□□ -0.51
ECHDC1-208	ENST00000436638	DCAF1	Q9Y4B6	1507 aa		11.83	□□□□□ -0.52
ECHDC1-208	ENST00000436638	MYO15B	Q96JP2	1530 aa		11.82	□□□□□ -0.52
ECHDC1-208	ENST00000436638	SPDYE2B	A6NHP3	402 aa		11.8	□□□□□ -0.52
ECHDC1-208	ENST00000436638	SPDYE6	P0CI01	402 aa		11.8	□□□□□ -0.52
ECHDC1-208	ENST00000436638	SPDYE2	Q495Y8	402 aa		11.8	□□□□□ -0.52
ECHDC1-208	ENST00000436638	ZNF692	Q9BU19	519 aa	Predicted RBP	11.77	□□□□□ -0.53
ECHDC1-208	ENST00000436638	AKT1S1	Q96B36	256 aa		11.74	□□□□□ -0.53
ECHDC1-208	ENST00000436638	SPDYE4	A6NLX3	237 aa		11.69	□□□□□ -0.54
ECHDC1-208	ENST00000436638	SSUH2	Q9Y2M2	353 aa		11.66	□□□□□ -0.54
ECHDC1-208	ENST00000436638	REM2	Q8IYK8	340 aa	Predicted RBP	11.64	□□□□□ -0.55
ECHDC1-208	ENST00000436638	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
ECHDC1-208	ENST00000436638	FKBP8	Q14318	412 aa		11.58	□□□□□ -0.56
ECHDC1-208	ENST00000436638	SCRIB	Q14160	1630 aa		11.57	□□□□□ -0.56
ECHDC1-208	ENST00000436638	CLEC11A	Q9Y240	323 aa		11.51	□□□□□ -0.57
ECHDC1-208	ENST00000436638	UNC13A	Q9UPW8	1703 aa		11.5	□□□□□ -0.57
ECHDC1-208	ENST00000436638	PITPNM1	O00562	1244 aa		11.5	□□□□□ -0.57
ECHDC1-208	ENST00000436638	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.5	□□□□□ -0.57
ECHDC1-208	ENST00000436638	CHRDL2	Q6WN34	429 aa		11.49	□□□□□ -0.57
ECHDC1-208	ENST00000436638	SHROOM4	Q9ULL8	1493 aa		11.46	□□□□□ -0.57
ECHDC1-208	ENST00000436638	BICRA	Q9NZM4	1560 aa		11.41	□□□□□ -0.58
ECHDC1-208	ENST00000436638	PROM2	Q8N271	834 aa		11.39	□□□□□ -0.59
ECHDC1-208	ENST00000436638	STAG3	Q9UJ98	1225 aa		11.37	□□□□□ -0.59
ECHDC1-208	ENST00000436638	PRR29	P0C7W0	189 aa		11.36	□□□□□ -0.59
ECHDC1-208	ENST00000436638	PIP4P2	Q8N4L2	257 aa		11.31	□□□□□ -0.6
ECHDC1-208	ENST00000436638	FXR2	P51116	673 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
ECHDC1-208	ENST00000436638	POTEH	Q6S545	545 aa		11.28	□□□□□ -0.6
ECHDC1-208	ENST00000436638	PRKAR2A	P13861	404 aa	Known RBP	11.24	□□□□□ -0.61
ECHDC1-208	ENST00000436638	CHADL	Q6NUI6	762 aa		11.21	□□□□□ -0.61
ECHDC1-208	ENST00000436638	FBXO3	Q9UK99	471 aa		11.2	□□□□□ -0.62
ECHDC1-208	ENST00000436638	SLC24A1	O60721	1099 aa		11.14	□□□□□ -0.63
ECHDC1-208	ENST00000436638	MIER1	Q8N108	512 aa		11.14	□□□□□ -0.63
ECHDC1-208	ENST00000436638	CREBZF	Q9NS37	354 aa		11.14	□□□□□ -0.63
ECHDC1-208	ENST00000436638	EIF4G1	Q04637	1599 aa	Known RBP	11.14	□□□□□ -0.63
ECHDC1-208	ENST00000436638	CECR2	Q9BXF3	1484 aa		11.12	□□□□□ -0.63
ECHDC1-208	ENST00000436638	PLCD3	Q8N3E9	789 aa		11.11	□□□□□ -0.63
ECHDC1-208	ENST00000436638	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.1	□□□□□ -0.63
ECHDC1-208	ENST00000436638	PLEKHG5	O94827	1062 aa		11.09	□□□□□ -0.63
ECHDC1-208	ENST00000436638	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.07	□□□□□ -0.64
ECHDC1-208	ENST00000436638	CC2D2A	Q9P2K1	1620 aa		11.06	□□□□□ -0.64
ECHDC1-208	ENST00000436638	SMARCA4	P51532	1647 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms