RNA–Protein interactions for RNA: ENST00000461239.2

ECHDC1-212, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 617 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-212ENST00000461239 AEBP2Q6ZN18 517 aaPredicted RBP28.31■■■□□ 2.12
ECHDC1-212ENST00000461239 CHIC1Q5VXU3 224 aa28.14■■■□□ 2.1
ECHDC1-212ENST00000461239 PHF23Q9BUL5 403 aaPredicted RBP24.87■■□□□ 1.57
ECHDC1-212ENST00000461239 SENP3Q9H4L4 574 aaPredicted RBP24.19■■□□□ 1.46
ECHDC1-212ENST00000461239 PLPPR3Q6T4P5 718 aa23.13■■□□□ 1.29
ECHDC1-212ENST00000461239 FOXD1Q16676 465 aa22.74■■□□□ 1.23
ECHDC1-212ENST00000461239 POTEDQ86YR6 584 aa22.71■■□□□ 1.23
ECHDC1-212ENST00000461239 ADRA2BP18089 450 aa21.71■■□□□ 1.07
ECHDC1-212ENST00000461239 PPP6R1Q9UPN7 881 aa21.7■■□□□ 1.06
ECHDC1-212ENST00000461239 MSH5O43196 834 aa21.54■■□□□ 1.04
ECHDC1-212ENST00000461239 PIAS4Q8N2W9 510 aaPredicted RBP20.99■□□□□ 0.95
ECHDC1-212ENST00000461239 KCNA4P22459 653 aa20.86■□□□□ 0.93
ECHDC1-212ENST00000461239 PPP4R3CPQ6ZMV5 832 aa20.49■□□□□ 0.87
ECHDC1-212ENST00000461239 EHMT2Q96KQ7 1210 aa20.2■□□□□ 0.82
ECHDC1-212ENST00000461239 NCBP3Q53F19 620 aaKnown RBP20.1■□□□□ 0.81
ECHDC1-212ENST00000461239 SLC4A1APQ9BWU0 796 aaKnown RBP19.95■□□□□ 0.78
ECHDC1-212ENST00000461239 NPM3O75607 178 aaKnown RBP19.89■□□□□ 0.77
ECHDC1-212ENST00000461239 SCAF1Q9H7N4 1312 aaKnown RBP19.75■□□□□ 0.75
ECHDC1-212ENST00000461239 CNKSR2Q8WXI2 1034 aa19.74■□□□□ 0.75
ECHDC1-212ENST00000461239 CSRNP3Q8WYN3 585 aa19.7■□□□□ 0.74
ECHDC1-212ENST00000461239 MAPK8IP2Q13387 824 aaPredicted RBP19.47■□□□□ 0.71
ECHDC1-212ENST00000461239 ZBTB22O15209 634 aa19.26■□□□□ 0.67
ECHDC1-212ENST00000461239 DNAJC5BQ9UF47 199 aa19.25■□□□□ 0.67
ECHDC1-212ENST00000461239 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
ECHDC1-212ENST00000461239 RNF216Q9NWF9 866 aaPredicted RBP19.19■□□□□ 0.66
ECHDC1-212ENST00000461239 CACNB1Q02641 598 aaPredicted RBP19.14■□□□□ 0.65
ECHDC1-212ENST00000461239 DMRT2Q9Y5R5 561 aa19.05■□□□□ 0.64
ECHDC1-212ENST00000461239 FOXD4L1Q9NU39 408 aa18.96■□□□□ 0.63
ECHDC1-212ENST00000461239 HOXD11P31277 338 aaPredicted RBP18.95■□□□□ 0.62
ECHDC1-212ENST00000461239 SLC4A2P04920 1241 aa18.64■□□□□ 0.57
ECHDC1-212ENST00000461239 DCAF8L1A6NGE4 600 aa18.39■□□□□ 0.53
ECHDC1-212ENST00000461239 RNF39Q9H2S5 420 aa18.34■□□□□ 0.53
ECHDC1-212ENST00000461239 MYCNP04198 464 aaPredicted RBP18.33■□□□□ 0.52
ECHDC1-212ENST00000461239 ATXN8OSP0DMR3 200 aa18.23■□□□□ 0.51
ECHDC1-212ENST00000461239 C1QBPQ07021 282 aaKnown RBP17.99■□□□□ 0.47
ECHDC1-212ENST00000461239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.98■□□□□ 0.47
ECHDC1-212ENST00000461239 ATF5Q9Y2D1 282 aaPredicted RBP17.85■□□□□ 0.45
ECHDC1-212ENST00000461239 U3KPZ7 1027 aaPredicted RBP17.85■□□□□ 0.45
ECHDC1-212ENST00000461239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.78■□□□□ 0.44
ECHDC1-212ENST00000461239 HNRNPUL2Q1KMD3 747 aaKnown RBP17.78■□□□□ 0.44
ECHDC1-212ENST00000461239 SAMD1Q6SPF0 538 aaPredicted RBP17.77■□□□□ 0.44
ECHDC1-212ENST00000461239 FKBP8Q14318 412 aa17.71■□□□□ 0.43
ECHDC1-212ENST00000461239 POTEHQ6S545 545 aa17.59■□□□□ 0.41
ECHDC1-212ENST00000461239 RTN4Q9NQC3 1192 aaKnown RBP17.42■□□□□ 0.38
ECHDC1-212ENST00000461239 ZNF219Q9P2Y4 722 aaPredicted RBP17.42■□□□□ 0.38
ECHDC1-212ENST00000461239 APLP2Q06481 763 aa17.4■□□□□ 0.38
ECHDC1-212ENST00000461239 AMER1Q5JTC6 1135 aaPredicted RBP17.39■□□□□ 0.37
ECHDC1-212ENST00000461239 SPINK5Q9NQ38 1064 aaPredicted RBP17.14■□□□□ 0.33
ECHDC1-212ENST00000461239 MKRN4PQ13434 485 aaPredicted RBP17.11■□□□□ 0.33
ECHDC1-212ENST00000461239 TRHP20396 242 aaPredicted RBP17.06■□□□□ 0.32
ECHDC1-212ENST00000461239 SPDYE4A6NLX3 237 aa17■□□□□ 0.31
ECHDC1-212ENST00000461239 POLA2Q14181 598 aa16.97■□□□□ 0.31
ECHDC1-212ENST00000461239 CAPN15O75808 1086 aa16.96■□□□□ 0.31
ECHDC1-212ENST00000461239 CCDC180Q9P1Z9 1646 aa16.96■□□□□ 0.3
ECHDC1-212ENST00000461239 FBLN2P98095 1184 aa16.93■□□□□ 0.3
ECHDC1-212ENST00000461239 PROM2Q8N271 834 aa16.91■□□□□ 0.3
ECHDC1-212ENST00000461239 SLC24A1O60721 1099 aa16.88■□□□□ 0.29
ECHDC1-212ENST00000461239 DSG3P32926 999 aa16.88■□□□□ 0.29
ECHDC1-212ENST00000461239 FBXO3Q9UK99 471 aa16.84■□□□□ 0.29
ECHDC1-212ENST00000461239 ABCB7O75027 752 aa16.74■□□□□ 0.27
ECHDC1-212ENST00000461239 ZBTB12Q9Y330 459 aaPredicted RBP16.71■□□□□ 0.27
ECHDC1-212ENST00000461239 VASPP50552 380 aaPredicted RBP16.65■□□□□ 0.26
ECHDC1-212ENST00000461239 ABCC9O60706 1549 aa16.58■□□□□ 0.24
ECHDC1-212ENST00000461239 IFNLR1Q8IU57 520 aaPredicted RBP16.5■□□□□ 0.23
ECHDC1-212ENST00000461239 OSCARQ8IYS5 282 aa16.39■□□□□ 0.21
ECHDC1-212ENST00000461239 ZNF692Q9BU19 519 aaPredicted RBP16.38■□□□□ 0.21
ECHDC1-212ENST00000461239 SSUH2Q9Y2M2 353 aa16.36■□□□□ 0.21
ECHDC1-212ENST00000461239 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
ECHDC1-212ENST00000461239 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
ECHDC1-212ENST00000461239 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
ECHDC1-212ENST00000461239 PKD2Q13563 968 aa16.24■□□□□ 0.19
ECHDC1-212ENST00000461239 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
ECHDC1-212ENST00000461239 STAG3Q9UJ98 1225 aa16.21■□□□□ 0.19
ECHDC1-212ENST00000461239 CHRDL2Q6WN34 429 aa16.14■□□□□ 0.17
ECHDC1-212ENST00000461239 SPOCK2Q92563 424 aa16.13■□□□□ 0.17
ECHDC1-212ENST00000461239 KLHL34Q8N239 644 aa16.12■□□□□ 0.17
ECHDC1-212ENST00000461239 PLCB2Q00722 1185 aa16.08■□□□□ 0.16
ECHDC1-212ENST00000461239 PLCD3Q8N3E9 789 aa16.06■□□□□ 0.16
ECHDC1-212ENST00000461239 RBM42Q9BTD8 480 aaKnown RBP16.05■□□□□ 0.16
ECHDC1-212ENST00000461239 DCAF8L2P0C7V8 631 aa16.04■□□□□ 0.16
ECHDC1-212ENST00000461239 SP7Q8TDD2 431 aaPredicted RBP16.03■□□□□ 0.16
ECHDC1-212ENST00000461239 ZCCHC6Q5VYS8 1495 aaKnown RBP16.02■□□□□ 0.15
ECHDC1-212ENST00000461239 MIER1Q8N108 512 aa16■□□□□ 0.15
ECHDC1-212ENST00000461239 ECM2O94769 699 aaPredicted RBP15.95■□□□□ 0.14
ECHDC1-212ENST00000461239 NACADO15069 1562 aa15.94■□□□□ 0.14
ECHDC1-212ENST00000461239 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
ECHDC1-212ENST00000461239 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
ECHDC1-212ENST00000461239 DCAF1Q9Y4B6 1507 aa15.87■□□□□ 0.13
ECHDC1-212ENST00000461239 ZBTB47Q9UFB7 747 aaPredicted RBP15.83■□□□□ 0.12
ECHDC1-212ENST00000461239 PLEKHG5O94827 1062 aa15.82■□□□□ 0.12
ECHDC1-212ENST00000461239 RGL2O15211 777 aa15.81■□□□□ 0.12
ECHDC1-212ENST00000461239 HAP1P54257 671 aaPredicted RBP15.8■□□□□ 0.12
ECHDC1-212ENST00000461239 NPM1P06748 294 aaKnown RBP eCLIP15.78■□□□□ 0.12
ECHDC1-212ENST00000461239 BBXQ8WY36 941 aaPredicted RBP15.75■□□□□ 0.11
ECHDC1-212ENST00000461239 CIZ1Q9ULV3 898 aaPredicted RBP15.73■□□□□ 0.11
ECHDC1-212ENST00000461239 AKT1S1Q96B36 256 aa15.7■□□□□ 0.1
ECHDC1-212ENST00000461239 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-212ENST00000461239 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-212ENST00000461239 TRIM41Q8WV44 630 aa15.63■□□□□ 0.09
ECHDC1-212ENST00000461239 NUBP1P53384 320 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms