RNA–Protein interactions for RNA: ENST00000368292.10

ECHDC1-204, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 854 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-204ENST00000368292 AEBP2Q6ZN18 517 aaPredicted RBP22.05■■□□□ 1.12
ECHDC1-204ENST00000368292 CHIC1Q5VXU3 224 aa21.47■■□□□ 1.03
ECHDC1-204ENST00000368292 PHF23Q9BUL5 403 aaPredicted RBP18.94■□□□□ 0.62
ECHDC1-204ENST00000368292 SENP3Q9H4L4 574 aaPredicted RBP18.63■□□□□ 0.57
ECHDC1-204ENST00000368292 PLPPR3Q6T4P5 718 aa17.39■□□□□ 0.37
ECHDC1-204ENST00000368292 FOXD1Q16676 465 aa17.34■□□□□ 0.37
ECHDC1-204ENST00000368292 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
ECHDC1-204ENST00000368292 ADRA2BP18089 450 aa16.67■□□□□ 0.26
ECHDC1-204ENST00000368292 PIAS4Q8N2W9 510 aaPredicted RBP16.3■□□□□ 0.2
ECHDC1-204ENST00000368292 MSH5O43196 834 aa15.93■□□□□ 0.14
ECHDC1-204ENST00000368292 PPP4R3CPQ6ZMV5 832 aa15.35■□□□□ 0.05
ECHDC1-204ENST00000368292 SCAF1Q9H7N4 1312 aaKnown RBP15.16■□□□□ 0.02
ECHDC1-204ENST00000368292 MAPK8IP2Q13387 824 aaPredicted RBP15.14■□□□□ 0.01
ECHDC1-204ENST00000368292 KCNA4P22459 653 aa14.99□□□□□ -0.01
ECHDC1-204ENST00000368292 CNKSR2Q8WXI2 1034 aa14.9□□□□□ -0.02
ECHDC1-204ENST00000368292 DMRT2Q9Y5R5 561 aa14.89□□□□□ -0.03
ECHDC1-204ENST00000368292 NCBP3Q53F19 620 aaKnown RBP14.88□□□□□ -0.03
ECHDC1-204ENST00000368292 NPM3O75607 178 aaKnown RBP14.73□□□□□ -0.05
ECHDC1-204ENST00000368292 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
ECHDC1-204ENST00000368292 HOXD11P31277 338 aaPredicted RBP14.6□□□□□ -0.07
ECHDC1-204ENST00000368292 POTEDQ86YR6 584 aa14.6□□□□□ -0.07
ECHDC1-204ENST00000368292 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
ECHDC1-204ENST00000368292 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
ECHDC1-204ENST00000368292 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
ECHDC1-204ENST00000368292 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
ECHDC1-204ENST00000368292 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.85□□□□□ -0.198e-8■■■□□ 16.3
ECHDC1-204ENST00000368292 ZBTB22O15209 634 aa13.83□□□□□ -0.2
ECHDC1-204ENST00000368292 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
ECHDC1-204ENST00000368292 FOXD4L1Q9NU39 408 aa13.76□□□□□ -0.21
ECHDC1-204ENST00000368292 CSRNP3Q8WYN3 585 aa13.71□□□□□ -0.21
ECHDC1-204ENST00000368292 RNF39Q9H2S5 420 aa13.71□□□□□ -0.21
ECHDC1-204ENST00000368292 U3KPZ7 1027 aaPredicted RBP13.68□□□□□ -0.22
ECHDC1-204ENST00000368292 MYCNP04198 464 aaPredicted RBP13.57□□□□□ -0.24
ECHDC1-204ENST00000368292 C1QBPQ07021 282 aaKnown RBP13.5□□□□□ -0.25
ECHDC1-204ENST00000368292 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.41□□□□□ -0.26
ECHDC1-204ENST00000368292 HNRNPUL2Q1KMD3 747 aaKnown RBP13.41□□□□□ -0.26
ECHDC1-204ENST00000368292 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
ECHDC1-204ENST00000368292 CACNB1Q02641 598 aaPredicted RBP13.31□□□□□ -0.28
ECHDC1-204ENST00000368292 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
ECHDC1-204ENST00000368292 ATXN8OSP0DMR3 200 aa13.29□□□□□ -0.28
ECHDC1-204ENST00000368292 ATF5Q9Y2D1 282 aaPredicted RBP13.29□□□□□ -0.28
ECHDC1-204ENST00000368292 APLP2Q06481 763 aa13.26□□□□□ -0.29
ECHDC1-204ENST00000368292 CAPN15O75808 1086 aa13.19□□□□□ -0.3
ECHDC1-204ENST00000368292 TRHP20396 242 aaPredicted RBP13.13□□□□□ -0.31
ECHDC1-204ENST00000368292 ZNF219Q9P2Y4 722 aaPredicted RBP13.12□□□□□ -0.31
ECHDC1-204ENST00000368292 DSG3P32926 999 aa13.03□□□□□ -0.32
ECHDC1-204ENST00000368292 ABCB7O75027 752 aa12.97□□□□□ -0.33
ECHDC1-204ENST00000368292 POLA2Q14181 598 aa12.95□□□□□ -0.34
ECHDC1-204ENST00000368292 MKRN4PQ13434 485 aaPredicted RBP12.7□□□□□ -0.38
ECHDC1-204ENST00000368292 ZBTB12Q9Y330 459 aaPredicted RBP12.67□□□□□ -0.38
ECHDC1-204ENST00000368292 FBLN2P98095 1184 aa12.62□□□□□ -0.39
ECHDC1-204ENST00000368292 OSCARQ8IYS5 282 aa12.5□□□□□ -0.41
ECHDC1-204ENST00000368292 SPDYE2BA6NHP3 402 aa12.37□□□□□ -0.43
ECHDC1-204ENST00000368292 SPDYE6P0CI01 402 aa12.37□□□□□ -0.43
ECHDC1-204ENST00000368292 SPDYE2Q495Y8 402 aa12.37□□□□□ -0.43
ECHDC1-204ENST00000368292 RBM42Q9BTD8 480 aaKnown RBP12.35□□□□□ -0.43
ECHDC1-204ENST00000368292 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
ECHDC1-204ENST00000368292 FKBP8Q14318 412 aa12.34□□□□□ -0.43
ECHDC1-204ENST00000368292 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
ECHDC1-204ENST00000368292 SSUH2Q9Y2M2 353 aa12.31□□□□□ -0.44
ECHDC1-204ENST00000368292 AKT1S1Q96B36 256 aa12.23□□□□□ -0.45
ECHDC1-204ENST00000368292 PROM2Q8N271 834 aa12.21□□□□□ -0.45
ECHDC1-204ENST00000368292 PABPN1Q86U42 306 aaKnown RBP eCLIP12.16□□□□□ -0.46
ECHDC1-204ENST00000368292 REM2Q8IYK8 340 aaPredicted RBP12.13□□□□□ -0.47
ECHDC1-204ENST00000368292 PITPNM1O00562 1244 aa12□□□□□ -0.49
ECHDC1-204ENST00000368292 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
ECHDC1-204ENST00000368292 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
ECHDC1-204ENST00000368292 STAG3Q9UJ98 1225 aa11.92□□□□□ -0.5
ECHDC1-204ENST00000368292 CHRDL2Q6WN34 429 aa11.89□□□□□ -0.51
ECHDC1-204ENST00000368292 FBXO3Q9UK99 471 aa11.87□□□□□ -0.51
ECHDC1-204ENST00000368292 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
ECHDC1-204ENST00000368292 FXR2P51116 673 aaKnown RBP eCLIP11.79□□□□□ -0.52
ECHDC1-204ENST00000368292 VASPP50552 380 aaPredicted RBP11.75□□□□□ -0.53
ECHDC1-204ENST00000368292 PIP4P2Q8N4L2 257 aa11.75□□□□□ -0.53
ECHDC1-204ENST00000368292 CREBZFQ9NS37 354 aa11.73□□□□□ -0.53
ECHDC1-204ENST00000368292 MIER1Q8N108 512 aa11.7□□□□□ -0.54
ECHDC1-204ENST00000368292 CHADLQ6NUI6 762 aa11.69□□□□□ -0.54
ECHDC1-204ENST00000368292 PRKAR2AP13861 404 aaKnown RBP11.67□□□□□ -0.54
ECHDC1-204ENST00000368292 PLCD3Q8N3E9 789 aa11.65□□□□□ -0.54
ECHDC1-204ENST00000368292 MNX1P50219 401 aaPredicted RBP11.64□□□□□ -0.55
ECHDC1-204ENST00000368292 IFNLR1Q8IU57 520 aaPredicted RBP11.63□□□□□ -0.55
ECHDC1-204ENST00000368292 PLEKHG5O94827 1062 aa11.57□□□□□ -0.56
ECHDC1-204ENST00000368292 FARP1Q9Y4F1 1045 aaPredicted RBP11.57□□□□□ -0.56
ECHDC1-204ENST00000368292 POTEHQ6S545 545 aa11.53□□□□□ -0.56
ECHDC1-204ENST00000368292 KLHL34Q8N239 644 aa11.51□□□□□ -0.57
ECHDC1-204ENST00000368292 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
ECHDC1-204ENST00000368292 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.57
ECHDC1-204ENST00000368292 NUBP1P53384 320 aa11.46□□□□□ -0.57
ECHDC1-204ENST00000368292 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
ECHDC1-204ENST00000368292 RASEFQ8IZ41 740 aa11.4□□□□□ -0.58
ECHDC1-204ENST00000368292 C19orf67A6NJJ6 358 aa11.38□□□□□ -0.59
ECHDC1-204ENST00000368292 HAX1O00165 279 aa11.33□□□□□ -0.6
ECHDC1-204ENST00000368292 EVX2Q03828 476 aa11.33□□□□□ -0.6
ECHDC1-204ENST00000368292 CD44P16070 742 aaKnown RBP11.32□□□□□ -0.6
ECHDC1-204ENST00000368292 TSPYL2Q9H2G4 693 aaPredicted RBP11.3□□□□□ -0.6
ECHDC1-204ENST00000368292 DCAF8Q5TAQ9 597 aa11.29□□□□□ -0.6
ECHDC1-204ENST00000368292 FAM212AQ96EL1 285 aa11.29□□□□□ -0.6
ECHDC1-204ENST00000368292 ZRANB1Q9UGI0 708 aa11.26□□□□□ -0.61
ECHDC1-204ENST00000368292 CCDC61Q9Y6R9 512 aa11.26□□□□□ -0.61
ECHDC1-204ENST00000368292 GSE1Q14687 1217 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms