RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.08	■□□□□ 0.48
ECHDC1-223	ENST00000534442	CHIC1	Q5VXU3	224 aa		18.06	■□□□□ 0.48
ECHDC1-223	ENST00000534442	PHF23	Q9BUL5	403 aa	Predicted RBP	15.98	■□□□□ 0.15
ECHDC1-223	ENST00000534442	SENP3	Q9H4L4	574 aa	Predicted RBP	15.17	■□□□□ 0.02
ECHDC1-223	ENST00000534442	PLPPR3	Q6T4P5	718 aa		14.82	□□□□□ -0.04
ECHDC1-223	ENST00000534442	FOXD1	Q16676	465 aa		14.08	□□□□□ -0.16
ECHDC1-223	ENST00000534442	ADRA2B	P18089	450 aa		13.96	□□□□□ -0.17
ECHDC1-223	ENST00000534442	PPP6R1	Q9UPN7	881 aa		13.96	□□□□□ -0.17
ECHDC1-223	ENST00000534442	KCNA4	P22459	653 aa		13.4	□□□□□ -0.26
ECHDC1-223	ENST00000534442	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.35	□□□□□ -0.27
ECHDC1-223	ENST00000534442	PPP4R3CP	Q6ZMV5	832 aa		13.15	□□□□□ -0.3
ECHDC1-223	ENST00000534442	EHMT2	Q96KQ7	1210 aa		12.97	□□□□□ -0.33
ECHDC1-223	ENST00000534442	NCBP3	Q53F19	620 aa	Known RBP	12.88	□□□□□ -0.35
ECHDC1-223	ENST00000534442	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.8	□□□□□ -0.36
ECHDC1-223	ENST00000534442	NPM3	O75607	178 aa	Known RBP	12.76	□□□□□ -0.37
ECHDC1-223	ENST00000534442	MSH5	O43196	834 aa		12.73	□□□□□ -0.37
ECHDC1-223	ENST00000534442	CNKSR2	Q8WXI2	1034 aa		12.66	□□□□□ -0.38
ECHDC1-223	ENST00000534442	SCAF1	Q9H7N4	1312 aa	Known RBP	12.65	□□□□□ -0.38
ECHDC1-223	ENST00000534442	CSRNP3	Q8WYN3	585 aa		12.65	□□□□□ -0.38
ECHDC1-223	ENST00000534442	DNAJC5B	Q9UF47	199 aa		12.62	□□□□□ -0.39
ECHDC1-223	ENST00000534442	DNAJC5	Q9H3Z4	198 aa		12.56	□□□□□ -0.4
ECHDC1-223	ENST00000534442	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.53	□□□□□ -0.4
ECHDC1-223	ENST00000534442	ZBTB22	O15209	634 aa		12.37	□□□□□ -0.43
ECHDC1-223	ENST00000534442	RNF216	Q9NWF9	866 aa	Predicted RBP	12.3	□□□□□ -0.44
ECHDC1-223	ENST00000534442	DMRT2	Q9Y5R5	561 aa		12.22	□□□□□ -0.45
ECHDC1-223	ENST00000534442	HOXD11	P31277	338 aa	Predicted RBP	12.15	□□□□□ -0.46
ECHDC1-223	ENST00000534442	FOXD4L1	Q9NU39	408 aa		12.15	□□□□□ -0.46
ECHDC1-223	ENST00000534442	ABCC9	O60706	1549 aa		12.15	□□□□□ -0.46
ECHDC1-223	ENST00000534442	SLC4A2	P04920	1241 aa		11.97	□□□□□ -0.49
ECHDC1-223	ENST00000534442	MYCN	P04198	464 aa	Predicted RBP	11.74	□□□□□ -0.53
ECHDC1-223	ENST00000534442	ATXN8OS	P0DMR3	200 aa		11.68	□□□□□ -0.54
ECHDC1-223	ENST00000534442	DCAF8L1	A6NGE4	600 aa		11.61	□□□□□ -0.55
ECHDC1-223	ENST00000534442	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.54	□□□□□ -0.56	8e-8	■■■□□ 16.3
ECHDC1-223	ENST00000534442	TRIM41	Q8WV44	630 aa		11.5	□□□□□ -0.57
ECHDC1-223	ENST00000534442	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.48	□□□□□ -0.57
ECHDC1-223	ENST00000534442		U3KPZ7	1027 aa	Predicted RBP	11.46	□□□□□ -0.57
ECHDC1-223	ENST00000534442	NISCH	Q9Y2I1	1504 aa		11.45	□□□□□ -0.58
ECHDC1-223	ENST00000534442	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.38	□□□□□ -0.59
ECHDC1-223	ENST00000534442	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.37	□□□□□ -0.59
ECHDC1-223	ENST00000534442	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.37	□□□□□ -0.59
ECHDC1-223	ENST00000534442	FKBP8	Q14318	412 aa		11.36	□□□□□ -0.59
ECHDC1-223	ENST00000534442	RTN4	Q9NQC3	1192 aa	Known RBP	11.19	□□□□□ -0.62
ECHDC1-223	ENST00000534442	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.18	□□□□□ -0.62
ECHDC1-223	ENST00000534442	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.13	□□□□□ -0.63
ECHDC1-223	ENST00000534442	APLP2	Q06481	763 aa		11.12	□□□□□ -0.63
ECHDC1-223	ENST00000534442	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
ECHDC1-223	ENST00000534442	CECR2	Q9BXF3	1484 aa		11.07	□□□□□ -0.64
ECHDC1-223	ENST00000534442	ILDR1	Q86SU0	546 aa	Predicted RBP	11.07	□□□□□ -0.64
ECHDC1-223	ENST00000534442	RNF39	Q9H2S5	420 aa		11.01	□□□□□ -0.65
ECHDC1-223	ENST00000534442	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.01	□□□□□ -0.65
ECHDC1-223	ENST00000534442	CUX2	O14529	1486 aa		11	□□□□□ -0.65
ECHDC1-223	ENST00000534442	MKRN4P	Q13434	485 aa	Predicted RBP	10.99	□□□□□ -0.65
ECHDC1-223	ENST00000534442	TRH	P20396	242 aa	Predicted RBP	10.95	□□□□□ -0.66
ECHDC1-223	ENST00000534442	SPDYE4	A6NLX3	237 aa		10.91	□□□□□ -0.66
ECHDC1-223	ENST00000534442	RB1CC1	Q8TDY2	1594 aa		10.9	□□□□□ -0.67
ECHDC1-223	ENST00000534442	POLA2	Q14181	598 aa		10.89	□□□□□ -0.67
ECHDC1-223	ENST00000534442	CC2D2A	Q9P2K1	1620 aa		10.88	□□□□□ -0.67
ECHDC1-223	ENST00000534442	CAPN15	O75808	1086 aa		10.88	□□□□□ -0.67
ECHDC1-223	ENST00000534442	C1QBP	Q07021	282 aa	Known RBP	10.86	□□□□□ -0.67
ECHDC1-223	ENST00000534442	FBLN2	P98095	1184 aa		10.85	□□□□□ -0.67
ECHDC1-223	ENST00000534442	POTED	Q86YR6	584 aa		10.85	□□□□□ -0.67
ECHDC1-223	ENST00000534442	PROM2	Q8N271	834 aa		10.84	□□□□□ -0.67
ECHDC1-223	ENST00000534442	SLC24A1	O60721	1099 aa		10.81	□□□□□ -0.68
ECHDC1-223	ENST00000534442	FBXO3	Q9UK99	471 aa		10.78	□□□□□ -0.68
ECHDC1-223	ENST00000534442	ABCB7	O75027	752 aa		10.75	□□□□□ -0.69
ECHDC1-223	ENST00000534442	CCDC180	Q9P1Z9	1646 aa		10.74	□□□□□ -0.69
ECHDC1-223	ENST00000534442	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.69	□□□□□ -0.7
ECHDC1-223	ENST00000534442	VASP	P50552	380 aa	Predicted RBP	10.67	□□□□□ -0.7
ECHDC1-223	ENST00000534442	UNC13A	Q9UPW8	1703 aa		10.67	□□□□□ -0.7
ECHDC1-223	ENST00000534442	BICRA	Q9NZM4	1560 aa		10.66	□□□□□ -0.7
ECHDC1-223	ENST00000534442	DSG3	P32926	999 aa		10.64	□□□□□ -0.71
ECHDC1-223	ENST00000534442	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.59	□□□□□ -0.71
ECHDC1-223	ENST00000534442	ERCC6	Q03468	1493 aa		10.58	□□□□□ -0.72
ECHDC1-223	ENST00000534442	EIF4G1	Q04637	1599 aa	Known RBP	10.52	□□□□□ -0.73
ECHDC1-223	ENST00000534442	OSCAR	Q8IYS5	282 aa		10.51	□□□□□ -0.73
ECHDC1-223	ENST00000534442	ZNF692	Q9BU19	519 aa	Predicted RBP	10.51	□□□□□ -0.73
ECHDC1-223	ENST00000534442	SSUH2	Q9Y2M2	353 aa		10.48	□□□□□ -0.73
ECHDC1-223	ENST00000534442	SPDYE2B	A6NHP3	402 aa		10.47	□□□□□ -0.73
ECHDC1-223	ENST00000534442	SPDYE6	P0CI01	402 aa		10.47	□□□□□ -0.73
ECHDC1-223	ENST00000534442	SPDYE2	Q495Y8	402 aa		10.47	□□□□□ -0.73
ECHDC1-223	ENST00000534442	NACAD	O15069	1562 aa		10.47	□□□□□ -0.73
ECHDC1-223	ENST00000534442	PKD2	Q13563	968 aa		10.43	□□□□□ -0.74
ECHDC1-223	ENST00000534442	STAG3	Q9UJ98	1225 aa		10.39	□□□□□ -0.75
ECHDC1-223	ENST00000534442	LMTK3	Q96Q04	1460 aa		10.38	□□□□□ -0.75
ECHDC1-223	ENST00000534442	SOCS7	O14512	581 aa		10.37	□□□□□ -0.75
ECHDC1-223	ENST00000534442	CACNB1	Q02641	598 aa	Predicted RBP	10.35	□□□□□ -0.75
ECHDC1-223	ENST00000534442	SPOCK2	Q92563	424 aa		10.35	□□□□□ -0.75
ECHDC1-223	ENST00000534442	KLHL34	Q8N239	644 aa		10.34	□□□□□ -0.75
ECHDC1-223	ENST00000534442	SHROOM4	Q9ULL8	1493 aa		10.32	□□□□□ -0.76
ECHDC1-223	ENST00000534442	RIMBP3C	A6NJZ7	1639 aa		10.32	□□□□□ -0.76
ECHDC1-223	ENST00000534442	RIMBP3B	A6NNM3	1639 aa		10.32	□□□□□ -0.76
ECHDC1-223	ENST00000534442	RIMBP3	Q9UFD9	1639 aa		10.32	□□□□□ -0.76
ECHDC1-223	ENST00000534442	PLCB2	Q00722	1185 aa		10.31	□□□□□ -0.76
ECHDC1-223	ENST00000534442	PLCD3	Q8N3E9	789 aa		10.3	□□□□□ -0.76
ECHDC1-223	ENST00000534442	DCAF8L2	P0C7V8	631 aa		10.28	□□□□□ -0.76
ECHDC1-223	ENST00000534442	MIER1	Q8N108	512 aa		10.28	□□□□□ -0.76
ECHDC1-223	ENST00000534442	ILDR2	Q71H61	639 aa		10.23	□□□□□ -0.77
ECHDC1-223	ENST00000534442	ECM2	O94769	699 aa	Predicted RBP	10.22	□□□□□ -0.77
ECHDC1-223	ENST00000534442	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.22	□□□□□ -0.77
ECHDC1-223	ENST00000534442	THOC2	Q8NI27	1593 aa	Known RBP	10.21	□□□□□ -0.78

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