Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.31■■□□□ 1
TRIM38O00635 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM38O00635 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
TRIM38O00635 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.3■■□□□ 1
TRIM38O00635 KRT19P1-201ENST00000405746 1186 ntBASIC21.3■■□□□ 1
TRIM38O00635 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.3■■□□□ 1
TRIM38O00635 BID-214ENST00000617586 542 ntTSL 5 BASIC21.3■■□□□ 1
TRIM38O00635 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.3■■□□□ 1
TRIM38O00635 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.3■■□□□ 1
TRIM38O00635 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.3■■□□□ 1
TRIM38O00635 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM38O00635 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.3■■□□□ 1
TRIM38O00635 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.3■■□□□ 1
TRIM38O00635 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM38O00635 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM38O00635 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM38O00635 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM38O00635 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.29■■□□□ 1
TRIM38O00635 AC026185.1-201ENST00000445748 174 ntBASIC21.29■■□□□ 1
TRIM38O00635 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.29■■□□□ 1
TRIM38O00635 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.29■■□□□ 1
TRIM38O00635 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM38O00635 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.29■■□□□ 1
TRIM38O00635 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM38O00635 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.29■■□□□ 1
TRIM38O00635 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TRIM38O00635 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.29■■□□□ 1
TRIM38O00635 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.28■■□□□ 1
TRIM38O00635 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.28■■□□□ 1
TRIM38O00635 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
TRIM38O00635 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRIM38O00635 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
TRIM38O00635 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.28■■□□□ 1
TRIM38O00635 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 OXCT2P1-201ENST00000447263 1535 ntBASIC21.28■■□□□ 1
TRIM38O00635 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
TRIM38O00635 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
TRIM38O00635 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM38O00635 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM38O00635 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM38O00635 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.27■■□□□ 1
TRIM38O00635 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.27■■□□□ 1
TRIM38O00635 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.27■■□□□ 1
TRIM38O00635 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TRIM38O00635 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM38O00635 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.27■□□□□ 0.99
TRIM38O00635 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.26■□□□□ 0.99
TRIM38O00635 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.26■□□□□ 0.99
TRIM38O00635 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.26■□□□□ 0.99
TRIM38O00635 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM38O00635 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM38O00635 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM38O00635 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM38O00635 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM38O00635 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM38O00635 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TRIM38O00635 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM38O00635 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM38O00635 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.25■□□□□ 0.99
TRIM38O00635 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM38O00635 FBXW4P1-201ENST00000426721 2239 ntBASIC21.25■□□□□ 0.99
TRIM38O00635 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM38O00635 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM38O00635 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM38O00635 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM38O00635 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.24■□□□□ 0.99
TRIM38O00635 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM38O00635 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM38O00635 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM38O00635 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRIM38O00635 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM38O00635 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms