Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.7■■□□□ 1.06
CBX4O00257 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.7■■□□□ 1.06
CBX4O00257 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CBX4O00257 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CBX4O00257 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CBX4O00257 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.7■■□□□ 1.06
CBX4O00257 AC010542.4-201ENST00000563151 1910 ntBASIC21.7■■□□□ 1.06
CBX4O00257 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CBX4O00257 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CBX4O00257 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.7■■□□□ 1.06
CBX4O00257 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.69■■□□□ 1.06
CBX4O00257 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.69■■□□□ 1.06
CBX4O00257 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.69■■□□□ 1.06
CBX4O00257 AC137761.2-201ENST00000561729 223 ntBASIC21.69■■□□□ 1.06
CBX4O00257 AC145350.3-201ENST00000569033 163 ntBASIC21.69■■□□□ 1.06
CBX4O00257 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CBX4O00257 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CBX4O00257 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.68■■□□□ 1.06
CBX4O00257 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CBX4O00257 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.68■■□□□ 1.06
CBX4O00257 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CBX4O00257 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CBX4O00257 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CBX4O00257 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CBX4O00257 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CBX4O00257 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CBX4O00257 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
CBX4O00257 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CBX4O00257 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CBX4O00257 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CBX4O00257 C11orf96-202ENST00000528572 1834 ntBASIC21.67■■□□□ 1.06
CBX4O00257 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CBX4O00257 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CBX4O00257 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.67■■□□□ 1.06
CBX4O00257 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.67■■□□□ 1.06
CBX4O00257 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.67■■□□□ 1.06
CBX4O00257 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.67■■□□□ 1.06
CBX4O00257 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.67■■□□□ 1.06
CBX4O00257 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CBX4O00257 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 AC016769.1-201ENST00000409132 1010 ntBASIC21.66■■□□□ 1.06
CBX4O00257 EEF1DP3-203ENST00000566025 782 ntBASIC21.66■■□□□ 1.06
CBX4O00257 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.66■■□□□ 1.06
CBX4O00257 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.66■■□□□ 1.06
CBX4O00257 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.66■■□□□ 1.06
CBX4O00257 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CBX4O00257 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CBX4O00257 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.65■■□□□ 1.06
CBX4O00257 AP001160.3-201ENST00000601484 763 ntBASIC21.65■■□□□ 1.06
CBX4O00257 AC053503.5-201ENST00000601508 636 ntBASIC21.65■■□□□ 1.06
CBX4O00257 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.65■■□□□ 1.06
CBX4O00257 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.65■■□□□ 1.06
CBX4O00257 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.65■■□□□ 1.06
CBX4O00257 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CBX4O00257 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.65■■□□□ 1.06
CBX4O00257 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.64■■□□□ 1.06
CBX4O00257 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CBX4O00257 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CBX4O00257 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.64■■□□□ 1.05
CBX4O00257 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.64■■□□□ 1.05
CBX4O00257 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.64■■□□□ 1.05
CBX4O00257 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CBX4O00257 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CBX4O00257 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CBX4O00257 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CBX4O00257 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.63■■□□□ 1.05
CBX4O00257 AC138907.5-202ENST00000569484 235 ntBASIC21.63■■□□□ 1.05
CBX4O00257 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.63■■□□□ 1.05
CBX4O00257 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.63■■□□□ 1.05
CBX4O00257 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CBX4O00257 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CBX4O00257 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms