Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 OXCT2P1-201ENST00000447263 1535 ntBASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 TSPY13P-201ENST00000338964 914 ntBASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 AC103834.1-201ENST00000520383 144 ntBASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USH1CQ9Y6N9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USH1CQ9Y6N9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 AC103724.3-201ENST00000564481 992 ntBASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USH1CQ9Y6N9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 AC104564.3-201ENST00000582367 638 ntBASIC21.08■□□□□ 0.97
USH1CQ9Y6N9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
USH1CQ9Y6N9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USH1CQ9Y6N9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
USH1CQ9Y6N9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
USH1CQ9Y6N9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USH1CQ9Y6N9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
USH1CQ9Y6N9 AC009102.2-201ENST00000606772 1639 ntBASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 AL391422.3-201ENST00000603791 2761 ntBASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USH1CQ9Y6N9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms