Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 AP006587.3-201ENST00000525742 1516 ntBASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHA3Q9Y5H8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
PCDHA3Q9Y5H8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 AC133561.4-201ENST00000566112 224 ntBASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 AL049796.1-201ENST00000565336 1766 ntBASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHA3Q9Y5H8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 BX842568.3-201ENST00000418104 571 ntBASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 SMUG1P1-201ENST00000590640 811 ntBASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
PCDHA3Q9Y5H8 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 AL136116.3-201ENST00000402907 1138 ntBASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHA3Q9Y5H8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHA3Q9Y5H8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms