Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 OXCT2P1-201ENST00000447263 1535 ntBASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 POU5F1P3-201ENST00000428824 1078 ntBASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.33■□□□□ 0.2
NOTCH3Q9UM47 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 AL121832.2-201ENST00000610979 668 ntBASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC16.32■□□□□ 0.2
NOTCH3Q9UM47 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 AC105036.2-201ENST00000569468 176 ntBASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
NOTCH3Q9UM47 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 AC010536.3-201ENST00000620306 533 ntBASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NOTCH3Q9UM47 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 RNA5SP413-201ENST00000516373 109 ntBASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
NOTCH3Q9UM47 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 TERT-206ENST00000508104 2486 ntTSL 5 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 FAM201B-201ENST00000458407 597 ntBASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NOTCH3Q9UM47 MKRN4P-201ENST00000444706 1521 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms