Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VTA1Q9NP79 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
VTA1Q9NP79 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VTA1Q9NP79 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.95■■□□□ 1.42
VTA1Q9NP79 MKRN4P-201ENST00000444706 1521 ntBASIC23.94■■□□□ 1.42
VTA1Q9NP79 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 AC093323.1-202ENST00000635031 2045 ntBASIC23.94■■□□□ 1.42
VTA1Q9NP79 KRT16P2-201ENST00000414673 1423 ntBASIC23.94■■□□□ 1.42
VTA1Q9NP79 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 AC069236.1-201ENST00000604339 616 ntBASIC23.94■■□□□ 1.42
VTA1Q9NP79 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.94■■□□□ 1.42
VTA1Q9NP79 AC008694.1-202ENST00000636953 945 ntBASIC23.94■■□□□ 1.42
VTA1Q9NP79 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VTA1Q9NP79 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VTA1Q9NP79 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VTA1Q9NP79 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
VTA1Q9NP79 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
VTA1Q9NP79 MIPEPP3-201ENST00000412105 444 ntBASIC23.93■■□□□ 1.42
VTA1Q9NP79 AL512625.2-201ENST00000417533 625 ntBASIC23.93■■□□□ 1.42
VTA1Q9NP79 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VTA1Q9NP79 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VTA1Q9NP79 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.93■■□□□ 1.42
VTA1Q9NP79 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.93■■□□□ 1.42
VTA1Q9NP79 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VTA1Q9NP79 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
VTA1Q9NP79 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VTA1Q9NP79 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VTA1Q9NP79 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
VTA1Q9NP79 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
VTA1Q9NP79 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.92■■□□□ 1.42
VTA1Q9NP79 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.92■■□□□ 1.42
VTA1Q9NP79 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC23.92■■□□□ 1.42
VTA1Q9NP79 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VTA1Q9NP79 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.92■■□□□ 1.42
VTA1Q9NP79 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.91■■□□□ 1.42
VTA1Q9NP79 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.91■■□□□ 1.42
VTA1Q9NP79 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.91■■□□□ 1.42
VTA1Q9NP79 MIR4651-201ENST00000582622 73 ntBASIC23.91■■□□□ 1.42
VTA1Q9NP79 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.91■■□□□ 1.42
VTA1Q9NP79 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.91■■□□□ 1.42
VTA1Q9NP79 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VTA1Q9NP79 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.91■■□□□ 1.42
VTA1Q9NP79 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VTA1Q9NP79 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
VTA1Q9NP79 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.9■■□□□ 1.42
VTA1Q9NP79 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.9■■□□□ 1.42
VTA1Q9NP79 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.9■■□□□ 1.42
VTA1Q9NP79 AC016405.3-201ENST00000607710 860 ntBASIC23.9■■□□□ 1.42
VTA1Q9NP79 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VTA1Q9NP79 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
VTA1Q9NP79 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.9■■□□□ 1.42
VTA1Q9NP79 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
VTA1Q9NP79 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VTA1Q9NP79 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
VTA1Q9NP79 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
VTA1Q9NP79 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.89■■□□□ 1.42
VTA1Q9NP79 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.89■■□□□ 1.42
VTA1Q9NP79 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
VTA1Q9NP79 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
VTA1Q9NP79 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
VTA1Q9NP79 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
VTA1Q9NP79 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.89■■□□□ 1.41
VTA1Q9NP79 AC093787.1-201ENST00000450396 207 ntBASIC23.89■■□□□ 1.41
VTA1Q9NP79 AL162412.1-201ENST00000567129 965 ntBASIC23.89■■□□□ 1.41
VTA1Q9NP79 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 RBM17P2-201ENST00000616397 1405 ntBASIC23.89■■□□□ 1.41
VTA1Q9NP79 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
VTA1Q9NP79 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.88■■□□□ 1.41
VTA1Q9NP79 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VTA1Q9NP79 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VTA1Q9NP79 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.88■■□□□ 1.41
VTA1Q9NP79 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
VTA1Q9NP79 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms