Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.67■□□□□ 0.58
VRK1Q99986 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK1Q99986 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK1Q99986 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.66■□□□□ 0.58
VRK1Q99986 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK1Q99986 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 AC123595.1-201ENST00000440769 1046 ntBASIC18.66■□□□□ 0.58
VRK1Q99986 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 AC068587.7-201ENST00000641602 218 ntBASIC18.66■□□□□ 0.58
VRK1Q99986 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.66■□□□□ 0.58
VRK1Q99986 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK1Q99986 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.65■□□□□ 0.58
VRK1Q99986 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.65■□□□□ 0.58
VRK1Q99986 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.65■□□□□ 0.58
VRK1Q99986 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
VRK1Q99986 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.65■□□□□ 0.58
VRK1Q99986 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VRK1Q99986 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.65■□□□□ 0.58
VRK1Q99986 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.65■□□□□ 0.58
VRK1Q99986 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.65■□□□□ 0.58
VRK1Q99986 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.65■□□□□ 0.58
VRK1Q99986 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.65■□□□□ 0.58
VRK1Q99986 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.65■□□□□ 0.58
VRK1Q99986 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK1Q99986 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.64■□□□□ 0.58
VRK1Q99986 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VRK1Q99986 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
VRK1Q99986 RNF165-205ENST00000588679 2904 ntBASIC18.64■□□□□ 0.58
VRK1Q99986 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VRK1Q99986 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
VRK1Q99986 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.64■□□□□ 0.57
VRK1Q99986 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.64■□□□□ 0.57
VRK1Q99986 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.64■□□□□ 0.57
VRK1Q99986 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.64■□□□□ 0.57
VRK1Q99986 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VRK1Q99986 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.64■□□□□ 0.57
VRK1Q99986 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.64■□□□□ 0.57
VRK1Q99986 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK1Q99986 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VRK1Q99986 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VRK1Q99986 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VRK1Q99986 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.63■□□□□ 0.57
VRK1Q99986 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VRK1Q99986 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.63■□□□□ 0.57
VRK1Q99986 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.63■□□□□ 0.57
VRK1Q99986 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VRK1Q99986 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.63■□□□□ 0.57
VRK1Q99986 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.63■□□□□ 0.57
VRK1Q99986 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VRK1Q99986 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK1Q99986 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK1Q99986 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK1Q99986 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK1Q99986 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.62■□□□□ 0.57
VRK1Q99986 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK1Q99986 AC073130.3-201ENST00000624389 2278 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VRK1Q99986 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L2-201ENST00000561772 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 CCDC92B-201ENST00000575506 885 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L6-201ENST00000626483 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L1-201ENST00000627662 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L8-201ENST00000629013 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L3-201ENST00000630187 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L7-201ENST00000630678 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 DUX4L5-201ENST00000630834 1275 ntBASIC18.62■□□□□ 0.57
VRK1Q99986 LINC02228-203ENST00000641970 1355 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms