Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CFAP54Q96N23 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.08■□□□□ 0.96
CFAP54Q96N23 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CFAP54Q96N23 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
CFAP54Q96N23 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CFAP54Q96N23 PRKY-204ENST00000533551 1019 ntBASIC21.08■□□□□ 0.96
CFAP54Q96N23 AC233702.5-201ENST00000584107 538 ntBASIC21.08■□□□□ 0.96
CFAP54Q96N23 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.08■□□□□ 0.96
CFAP54Q96N23 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.08■□□□□ 0.96
CFAP54Q96N23 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 RPS2P55-201ENST00000397318 883 ntBASIC21.07■□□□□ 0.96
CFAP54Q96N23 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 AC107956.1-201ENST00000494359 873 ntBASIC21.07■□□□□ 0.96
CFAP54Q96N23 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CFAP54Q96N23 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CFAP54Q96N23 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CFAP54Q96N23 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CFAP54Q96N23 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CFAP54Q96N23 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.06■□□□□ 0.96
CFAP54Q96N23 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.06■□□□□ 0.96
CFAP54Q96N23 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CFAP54Q96N23 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CFAP54Q96N23 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.06■□□□□ 0.96
CFAP54Q96N23 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.06■□□□□ 0.96
CFAP54Q96N23 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CFAP54Q96N23 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CFAP54Q96N23 TPM4P1-201ENST00000436100 807 ntBASIC21.06■□□□□ 0.96
CFAP54Q96N23 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.06■□□□□ 0.96
CFAP54Q96N23 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 AL355075.4-201ENST00000554988 638 ntBASIC21.05■□□□□ 0.96
CFAP54Q96N23 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 AL049637.2-201ENST00000641778 930 ntBASIC21.05■□□□□ 0.96
CFAP54Q96N23 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.05■□□□□ 0.96
CFAP54Q96N23 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CFAP54Q96N23 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CFAP54Q96N23 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CFAP54Q96N23 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.04■□□□□ 0.96
CFAP54Q96N23 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CFAP54Q96N23 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.04■□□□□ 0.96
CFAP54Q96N23 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.04■□□□□ 0.96
CFAP54Q96N23 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CFAP54Q96N23 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.04■□□□□ 0.96
CFAP54Q96N23 AC010980.2-201ENST00000587099 1412 ntBASIC21.04■□□□□ 0.96
CFAP54Q96N23 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CFAP54Q96N23 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CFAP54Q96N23 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CFAP54Q96N23 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 AL121894.2-201ENST00000602977 491 ntBASIC21.03■□□□□ 0.96
CFAP54Q96N23 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 AL590326.2-201ENST00000625139 305 ntBASIC21.03■□□□□ 0.96
CFAP54Q96N23 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 AC004687.1-201ENST00000579003 1625 ntBASIC21.03■□□□□ 0.96
CFAP54Q96N23 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CFAP54Q96N23 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.03■□□□□ 0.96
CFAP54Q96N23 AC069236.1-201ENST00000604339 616 ntBASIC21.03■□□□□ 0.96
CFAP54Q96N23 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.02■□□□□ 0.96
CFAP54Q96N23 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.02■□□□□ 0.96
CFAP54Q96N23 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CFAP54Q96N23 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CFAP54Q96N23 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CFAP54Q96N23 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CFAP54Q96N23 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.02■□□□□ 0.96
CFAP54Q96N23 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CFAP54Q96N23 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.02■□□□□ 0.96
CFAP54Q96N23 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.02■□□□□ 0.96
CFAP54Q96N23 AC138932.3-201ENST00000567634 1902 ntBASIC21.02■□□□□ 0.96
CFAP54Q96N23 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CFAP54Q96N23 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CFAP54Q96N23 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CFAP54Q96N23 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CFAP54Q96N23 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
CFAP54Q96N23 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.02■□□□□ 0.95
CFAP54Q96N23 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CFAP54Q96N23 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.02■□□□□ 0.95
CFAP54Q96N23 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms