Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.3■□□□□ 0.52
CMTM3Q96MX0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CMTM3Q96MX0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CMTM3Q96MX0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CMTM3Q96MX0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 AC137630.3-201ENST00000607245 391 ntBASIC18.29■□□□□ 0.52
CMTM3Q96MX0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 AC009102.2-201ENST00000606772 1639 ntBASIC18.29■□□□□ 0.52
CMTM3Q96MX0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CMTM3Q96MX0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 PVT1_1.1-201ENST00000615125 194 ntBASIC18.28■□□□□ 0.52
CMTM3Q96MX0 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CMTM3Q96MX0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 RARRES2P2-201ENST00000394842 485 ntBASIC18.27■□□□□ 0.52
CMTM3Q96MX0 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.27■□□□□ 0.52
CMTM3Q96MX0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.27■□□□□ 0.51
CMTM3Q96MX0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CMTM3Q96MX0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CMTM3Q96MX0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CMTM3Q96MX0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 AC073314.1-201ENST00000568729 2216 ntBASIC18.26■□□□□ 0.51
CMTM3Q96MX0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 DUX4L18-201ENST00000553347 1267 ntBASIC18.26■□□□□ 0.51
CMTM3Q96MX0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CMTM3Q96MX0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 AC068587.7-201ENST00000641602 218 ntBASIC18.25■□□□□ 0.51
CMTM3Q96MX0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CMTM3Q96MX0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.24■□□□□ 0.51
CMTM3Q96MX0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CMTM3Q96MX0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CMTM3Q96MX0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms