Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
RTF1Q92541 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
RTF1Q92541 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
RTF1Q92541 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
RTF1Q92541 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC27.83■■■□□ 2.04
RTF1Q92541 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC27.82■■■□□ 2.04
RTF1Q92541 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.82■■■□□ 2.04
RTF1Q92541 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC27.82■■■□□ 2.04
RTF1Q92541 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 GALC-202ENST00000393568 2054 ntTSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 NAA20-201ENST00000310450 920 ntTSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC27.81■■■□□ 2.04
RTF1Q92541 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 CROCCP5-201ENST00000436658 830 ntBASIC27.81■■■□□ 2.04
RTF1Q92541 AC006970.2-201ENST00000450065 779 ntBASIC27.81■■■□□ 2.04
RTF1Q92541 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.81■■■□□ 2.04
RTF1Q92541 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
RTF1Q92541 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC27.81■■■□□ 2.04
RTF1Q92541 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
RTF1Q92541 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
RTF1Q92541 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC27.8■■■□□ 2.04
RTF1Q92541 RNF146-206ENST00000480444 843 ntTSL 2 BASIC27.8■■■□□ 2.04
RTF1Q92541 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.8■■■□□ 2.04
RTF1Q92541 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
RTF1Q92541 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC27.8■■■□□ 2.04
RTF1Q92541 DUX4L16-201ENST00000555130 1264 ntBASIC27.8■■■□□ 2.04
RTF1Q92541 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
RTF1Q92541 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
RTF1Q92541 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
RTF1Q92541 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC27.79■■■□□ 2.04
RTF1Q92541 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
RTF1Q92541 AC003102.1-202ENST00000563394 1796 ntBASIC27.79■■■□□ 2.04
RTF1Q92541 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC27.79■■■□□ 2.04
RTF1Q92541 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC27.79■■■□□ 2.04
RTF1Q92541 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
RTF1Q92541 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC27.79■■■□□ 2.04
RTF1Q92541 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
RTF1Q92541 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27.79■■■□□ 2.04
RTF1Q92541 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
RTF1Q92541 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
RTF1Q92541 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
RTF1Q92541 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
RTF1Q92541 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC27.78■■■□□ 2.04
RTF1Q92541 HLA-L-209ENST00000420110 1011 ntBASIC27.78■■■□□ 2.04
RTF1Q92541 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
RTF1Q92541 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.78■■■□□ 2.04
RTF1Q92541 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC27.78■■■□□ 2.04
RTF1Q92541 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.78■■■□□ 2.04
RTF1Q92541 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.78■■■□□ 2.04
RTF1Q92541 AC008175.2-201ENST00000612840 297 ntBASIC27.78■■■□□ 2.04
RTF1Q92541 AC231657.2-201ENST00000624556 255 ntBASIC27.78■■■□□ 2.04
RTF1Q92541 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC27.78■■■□□ 2.04
RTF1Q92541 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
RTF1Q92541 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
RTF1Q92541 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
RTF1Q92541 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
RTF1Q92541 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC27.77■■■□□ 2.04
RTF1Q92541 SLC7A5P2-201ENST00000553010 536 ntBASIC27.77■■■□□ 2.04
RTF1Q92541 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.77■■■□□ 2.04
RTF1Q92541 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC27.77■■■□□ 2.04
RTF1Q92541 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
RTF1Q92541 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
RTF1Q92541 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
RTF1Q92541 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RTF1Q92541 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.04
RTF1Q92541 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC27.76■■■□□ 2.04
RTF1Q92541 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC27.76■■■□□ 2.04
RTF1Q92541 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC27.76■■■□□ 2.03
RTF1Q92541 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC27.76■■■□□ 2.03
RTF1Q92541 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
RTF1Q92541 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.03
RTF1Q92541 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.76■■■□□ 2.03
RTF1Q92541 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
RTF1Q92541 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC27.76■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms