Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC128676.1-201ENST00000454392 318 ntBASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 AP006587.3-201ENST00000525742 1516 ntBASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 AC120498.10-201ENST00000621827 505 ntBASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 RPS2P4-201ENST00000476944 856 ntBASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.92■■□□□ 1.1
SLC44A3Q8N4M1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 AC010980.2-201ENST00000587099 1412 ntBASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 ANOS2P-203ENST00000472227 1816 ntBASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
SLC44A3Q8N4M1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 AC008175.2-201ENST00000612840 297 ntBASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC44A3Q8N4M1 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SLC44A3Q8N4M1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.89■■□□□ 1.1
SLC44A3Q8N4M1 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SLC44A3Q8N4M1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 AL162412.1-201ENST00000567129 965 ntBASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 AL591742.1-201ENST00000604433 565 ntBASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.89■■□□□ 1.09
SLC44A3Q8N4M1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC44A3Q8N4M1 AC092068.2-201ENST00000590491 1708 ntBASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC44A3Q8N4M1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms