Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SH3RF1Q7Z6J0 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
SH3RF1Q7Z6J0 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 METTL26-203ENST00000397664 604 ntTSL 2 BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
SH3RF1Q7Z6J0 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SH3RF1Q7Z6J0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SH3RF1Q7Z6J0 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SH3RF1Q7Z6J0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 KRT19P1-201ENST00000405746 1186 ntBASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SH3RF1Q7Z6J0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SH3RF1Q7Z6J0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 AC142086.2-201ENST00000569753 217 ntBASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SH3RF1Q7Z6J0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.42■■□□□ 1.5
SH3RF1Q7Z6J0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 BX005040.4-201ENST00000637145 1518 ntBASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SH3RF1Q7Z6J0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms