Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 PNMA6B-201ENST00000538162 1200 ntBASIC20.97■□□□□ 0.95
RIF1Q5UIP0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RIF1Q5UIP0 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 PRKY-204ENST00000533551 1019 ntBASIC20.96■□□□□ 0.95
RIF1Q5UIP0 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 AC060766.5-201ENST00000590539 871 ntBASIC20.96■□□□□ 0.95
RIF1Q5UIP0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RIF1Q5UIP0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.95■□□□□ 0.94
RIF1Q5UIP0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RIF1Q5UIP0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.93■□□□□ 0.94
RIF1Q5UIP0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.92■□□□□ 0.94
RIF1Q5UIP0 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.91■□□□□ 0.94
RIF1Q5UIP0 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
RIF1Q5UIP0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.91■□□□□ 0.94
RIF1Q5UIP0 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.91■□□□□ 0.94
RIF1Q5UIP0 POM121L13P-201ENST00000422362 380 ntBASIC20.91■□□□□ 0.94
RIF1Q5UIP0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.91■□□□□ 0.94
RIF1Q5UIP0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RIF1Q5UIP0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 AL591742.1-201ENST00000604433 565 ntBASIC20.9■□□□□ 0.94
RIF1Q5UIP0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 RBM17P2-201ENST00000616397 1405 ntBASIC20.9■□□□□ 0.94
RIF1Q5UIP0 KRT17P1-201ENST00000399211 1546 ntBASIC20.9■□□□□ 0.94
RIF1Q5UIP0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RIF1Q5UIP0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RIF1Q5UIP0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.89■□□□□ 0.94
RIF1Q5UIP0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.89■□□□□ 0.94
RIF1Q5UIP0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.89■□□□□ 0.94
RIF1Q5UIP0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RIF1Q5UIP0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RIF1Q5UIP0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms