Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
YBX1P67809 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
YBX1P67809 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.78■□□□□ 0.92
YBX1P67809 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.78■□□□□ 0.92
YBX1P67809 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
YBX1P67809 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.77■□□□□ 0.92
YBX1P67809 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
YBX1P67809 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
YBX1P67809 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
YBX1P67809 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
YBX1P67809 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.77■□□□□ 0.92
YBX1P67809 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.77■□□□□ 0.92
YBX1P67809 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.77■□□□□ 0.92
YBX1P67809 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.77■□□□□ 0.92
YBX1P67809 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
YBX1P67809 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
YBX1P67809 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
YBX1P67809 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
YBX1P67809 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
YBX1P67809 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.76■□□□□ 0.91
YBX1P67809 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
YBX1P67809 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.76■□□□□ 0.91
YBX1P67809 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.76■□□□□ 0.91
YBX1P67809 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.76■□□□□ 0.91
YBX1P67809 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.76■□□□□ 0.91
YBX1P67809 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.76■□□□□ 0.91
YBX1P67809 AL354811.1-201ENST00000610286 706 ntBASIC20.76■□□□□ 0.91
YBX1P67809 AL358852.1-201ENST00000623174 1268 ntBASIC20.76■□□□□ 0.91
YBX1P67809 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 AP004607.7-201ENST00000527152 1677 ntBASIC20.76■□□□□ 0.91
YBX1P67809 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
YBX1P67809 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
YBX1P67809 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.75■□□□□ 0.91
YBX1P67809 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.75■□□□□ 0.91
YBX1P67809 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
YBX1P67809 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
YBX1P67809 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
YBX1P67809 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
YBX1P67809 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
YBX1P67809 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.74■□□□□ 0.91
YBX1P67809 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.74■□□□□ 0.91
YBX1P67809 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.74■□□□□ 0.91
YBX1P67809 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
YBX1P67809 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
YBX1P67809 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.73■□□□□ 0.91
YBX1P67809 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.73■□□□□ 0.91
YBX1P67809 BX005040.4-201ENST00000637145 1518 ntBASIC20.73■□□□□ 0.91
YBX1P67809 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 SLC25A24-204ENST00000569674 2357 ntBASIC20.73■□□□□ 0.91
YBX1P67809 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
YBX1P67809 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.73■□□□□ 0.91
YBX1P67809 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 AC026271.2-201ENST00000428091 497 ntBASIC20.73■□□□□ 0.91
YBX1P67809 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.73■□□□□ 0.91
YBX1P67809 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.73■□□□□ 0.91
YBX1P67809 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
YBX1P67809 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
YBX1P67809 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.73■□□□□ 0.91
YBX1P67809 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
YBX1P67809 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.72■□□□□ 0.91
YBX1P67809 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.72■□□□□ 0.91
YBX1P67809 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.72■□□□□ 0.91
YBX1P67809 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
YBX1P67809 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 AC027612.3-201ENST00000413684 1047 ntBASIC20.72■□□□□ 0.91
YBX1P67809 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.72■□□□□ 0.91
YBX1P67809 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.72■□□□□ 0.91
YBX1P67809 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.72■□□□□ 0.91
YBX1P67809 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
YBX1P67809 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
YBX1P67809 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.72■□□□□ 0.91
YBX1P67809 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.71■□□□□ 0.91
YBX1P67809 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
YBX1P67809 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms