Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 MFF-203ENST00000349901 1716 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA3P55318 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA3P55318 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 THA1P-201ENST00000590384 1145 ntBASIC15.92■□□□□ 0.14
FOXA3P55318 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC15.92■□□□□ 0.14
FOXA3P55318 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC15.92■□□□□ 0.14
FOXA3P55318 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA3P55318 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA3P55318 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.92■□□□□ 0.14
FOXA3P55318 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
FOXA3P55318 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
FOXA3P55318 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA3P55318 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.91■□□□□ 0.14
FOXA3P55318 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC15.91■□□□□ 0.14
FOXA3P55318 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 MIR4281-201ENST00000580852 62 ntBASIC15.91■□□□□ 0.14
FOXA3P55318 AC104564.3-201ENST00000582367 638 ntBASIC15.91■□□□□ 0.14
FOXA3P55318 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
FOXA3P55318 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA3P55318 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
FOXA3P55318 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
FOXA3P55318 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA3P55318 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXA3P55318 MCC-208ENST00000514701 2855 ntTSL 2 BASIC15.9■□□□□ 0.14
FOXA3P55318 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA3P55318 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC15.9■□□□□ 0.14
FOXA3P55318 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA3P55318 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
FOXA3P55318 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXA3P55318 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
FOXA3P55318 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 ASB1-202ENST00000409297 878 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA3P55318 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
FOXA3P55318 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
FOXA3P55318 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA3P55318 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXA3P55318 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA3P55318 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
FOXA3P55318 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA3P55318 RARG-204ENST00000543726 1779 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA3P55318 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
FOXA3P55318 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA3P55318 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
FOXA3P55318 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA3P55318 RNF126P1-201ENST00000567452 1320 ntBASIC15.89■□□□□ 0.13
FOXA3P55318 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
FOXA3P55318 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA3P55318 C17orf82-201ENST00000623772 1530 ntBASIC15.89■□□□□ 0.13
FOXA3P55318 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
FOXA3P55318 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 PCDHAC2-203ENST00000615316 3011 ntBASIC15.88■□□□□ 0.13
FOXA3P55318 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA3P55318 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXA3P55318 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms