Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
NKX2-1P43699 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 SENP5-202ENST00000419026 973 ntTSL 3 BASIC17.37■□□□□ 0.37
NKX2-1P43699 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC17.37■□□□□ 0.37
NKX2-1P43699 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.37■□□□□ 0.37
NKX2-1P43699 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX2-1P43699 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.36■□□□□ 0.37
NKX2-1P43699 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.36■□□□□ 0.37
NKX2-1P43699 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC17.36■□□□□ 0.37
NKX2-1P43699 AC010980.1-201ENST00000587192 1142 ntBASIC17.36■□□□□ 0.37
NKX2-1P43699 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 C17orf82-201ENST00000623772 1530 ntBASIC17.36■□□□□ 0.37
NKX2-1P43699 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX2-1P43699 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.36■□□□□ 0.37
NKX2-1P43699 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
NKX2-1P43699 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.35■□□□□ 0.37
NKX2-1P43699 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NKX2-1P43699 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX2-1P43699 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.35■□□□□ 0.37
NKX2-1P43699 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.35■□□□□ 0.37
NKX2-1P43699 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX2-1P43699 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.35■□□□□ 0.37
NKX2-1P43699 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
NKX2-1P43699 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
NKX2-1P43699 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX2-1P43699 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NKX2-1P43699 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX2-1P43699 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX2-1P43699 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
NKX2-1P43699 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NKX2-1P43699 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NKX2-1P43699 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NKX2-1P43699 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
NKX2-1P43699 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NKX2-1P43699 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC17.34■□□□□ 0.37
NKX2-1P43699 AC079089.2-201ENST00000531211 1277 ntBASIC17.34■□□□□ 0.37
NKX2-1P43699 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC17.34■□□□□ 0.37
NKX2-1P43699 CLTA-210ENST00000540080 989 ntTSL 2 BASIC17.34■□□□□ 0.37
NKX2-1P43699 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 AL033527.3-201ENST00000566366 1196 ntBASIC17.34■□□□□ 0.37
NKX2-1P43699 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX2-1P43699 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.33■□□□□ 0.37
NKX2-1P43699 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
NKX2-1P43699 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX2-1P43699 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NKX2-1P43699 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.33■□□□□ 0.37
NKX2-1P43699 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
NKX2-1P43699 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX2-1P43699 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
NKX2-1P43699 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX2-1P43699 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
NKX2-1P43699 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
NKX2-1P43699 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.33■□□□□ 0.37
NKX2-1P43699 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.33■□□□□ 0.37
NKX2-1P43699 MIR4508-201ENST00000584178 70 ntBASIC17.33■□□□□ 0.36
NKX2-1P43699 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC17.33■□□□□ 0.36
NKX2-1P43699 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC17.33■□□□□ 0.36
NKX2-1P43699 AC137630.3-201ENST00000607245 391 ntBASIC17.33■□□□□ 0.36
NKX2-1P43699 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
NKX2-1P43699 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX2-1P43699 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX2-1P43699 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX2-1P43699 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX2-1P43699 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX2-1P43699 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX2-1P43699 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NKX2-1P43699 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC17.32■□□□□ 0.36
NKX2-1P43699 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.32■□□□□ 0.36
NKX2-1P43699 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms