Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
COL5A3P25940 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 RNF146-206ENST00000480444 843 ntTSL 2 BASIC27.19■■□□□ 1.94
COL5A3P25940 UNC93B5-201ENST00000530315 699 ntBASIC27.19■■□□□ 1.94
COL5A3P25940 IRX5-204ENST00000560154 879 ntTSL 5 BASIC27.19■■□□□ 1.94
COL5A3P25940 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC27.18■■□□□ 1.94
COL5A3P25940 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC27.18■■□□□ 1.94
COL5A3P25940 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
COL5A3P25940 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC27.18■■□□□ 1.94
COL5A3P25940 CD44-222ENST00000526025 1052 ntTSL 2 BASIC27.18■■□□□ 1.94
COL5A3P25940 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC27.18■■□□□ 1.94
COL5A3P25940 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC27.18■■□□□ 1.94
COL5A3P25940 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL5A3P25940 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL5A3P25940 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC27.17■■□□□ 1.94
COL5A3P25940 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL5A3P25940 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL5A3P25940 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL5A3P25940 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC27.17■■□□□ 1.94
COL5A3P25940 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC27.17■■□□□ 1.94
COL5A3P25940 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
COL5A3P25940 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
COL5A3P25940 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC27.17■■□□□ 1.94
COL5A3P25940 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL5A3P25940 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC27.17■■□□□ 1.94
COL5A3P25940 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC27.16■■□□□ 1.94
COL5A3P25940 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC27.16■■□□□ 1.94
COL5A3P25940 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC27.16■■□□□ 1.94
COL5A3P25940 AC243732.1-201ENST00000612648 864 ntBASIC27.16■■□□□ 1.94
COL5A3P25940 AC008175.2-201ENST00000612840 297 ntBASIC27.16■■□□□ 1.94
COL5A3P25940 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC27.16■■□□□ 1.94
COL5A3P25940 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC27.16■■□□□ 1.94
COL5A3P25940 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC27.16■■□□□ 1.94
COL5A3P25940 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
COL5A3P25940 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC27.16■■□□□ 1.94
COL5A3P25940 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
COL5A3P25940 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 BET1L-207ENST00000529614 560 ntTSL 5 BASIC27.16■■□□□ 1.94
COL5A3P25940 AC008694.1-202ENST00000636953 945 ntBASIC27.16■■□□□ 1.94
COL5A3P25940 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL5A3P25940 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL5A3P25940 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
COL5A3P25940 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC27.15■■□□□ 1.94
COL5A3P25940 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC27.15■■□□□ 1.94
COL5A3P25940 AC097658.1-201ENST00000475555 843 ntBASIC27.15■■□□□ 1.94
COL5A3P25940 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC27.15■■□□□ 1.94
COL5A3P25940 AC006058.3-201ENST00000606217 1069 ntBASIC27.15■■□□□ 1.94
COL5A3P25940 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC27.15■■□□□ 1.94
COL5A3P25940 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL5A3P25940 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
COL5A3P25940 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC27.14■■□□□ 1.94
COL5A3P25940 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
COL5A3P25940 POU5F1P4-201ENST00000413175 1085 ntBASIC27.13■■□□□ 1.93
COL5A3P25940 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC27.13■■□□□ 1.93
COL5A3P25940 AP003097.1-201ENST00000530657 1135 ntBASIC27.13■■□□□ 1.93
COL5A3P25940 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC27.13■■□□□ 1.93
COL5A3P25940 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC27.13■■□□□ 1.93
COL5A3P25940 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL5A3P25940 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL5A3P25940 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
COL5A3P25940 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC27.13■■□□□ 1.93
COL5A3P25940 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL5A3P25940 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC27.13■■□□□ 1.93
COL5A3P25940 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC27.13■■□□□ 1.93
COL5A3P25940 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL5A3P25940 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL5A3P25940 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL5A3P25940 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL5A3P25940 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC27.12■■□□□ 1.93
COL5A3P25940 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
COL5A3P25940 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC27.12■■□□□ 1.93
COL5A3P25940 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL5A3P25940 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL5A3P25940 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL5A3P25940 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC27.11■■□□□ 1.93
COL5A3P25940 ESRRAP1-201ENST00000400596 1257 ntBASIC27.11■■□□□ 1.93
COL5A3P25940 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC27.11■■□□□ 1.93
COL5A3P25940 AC142381.4-202ENST00000563973 229 ntBASIC27.11■■□□□ 1.93
COL5A3P25940 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC27.11■■□□□ 1.93
COL5A3P25940 MMD2-204ENST00000612910 778 ntTSL 5 BASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms